View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6905_low_3 (Length: 437)
Name: NF6905_low_3
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6905_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0337 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 24508668 - 24508246
Alignment:
| Q |
18 |
aagatcacctaacatgttgctgtagaacaatcactagcaaggcgatgcatggcatgaatttgacttcatgaatattgaggaatttttcattacgtaaagt |
117 |
Q |
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| T |
24508668 |
aagatcacctaacatgttgctgtagaacaatcactaacaaggtgatgcatgacatgaatttgacttcatgaatattgaggaatttttcattacgtaaagt |
24508569 |
T |
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| Q |
118 |
ccatagcttgcatcattcttttaatgaatgatctaatgtataatttgcccttatatatagttaagcttcaacttaacattgcaatgcttttgtatcataa |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24508568 |
ccatagcttgcatcattcttttagtgaatgatctaatgtataatttacccttatatatagttaagctacaacttaacattgcaatgcttttgtatcataa |
24508469 |
T |
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| Q |
218 |
agagaaaatagatttttccttggaatccagttccaaatatgaagttttagacaacgagaaagtaaaatattcttcttgaagcgatatgttttttagcgga |
317 |
Q |
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| T |
24508468 |
agagaaaatagatttttccatggaatccagttccaaatatgaagttttagacaaccagaaagtaaaatattcttcttaaagcgatatgttttttagcgga |
24508369 |
T |
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| Q |
318 |
cttcttaaggactgtataaagatgtagagtatga-----nnnnnnnnnnnnnatataatacagaaagatgtagagccaataagtgtggtgttccttcatg |
412 |
Q |
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| T |
24508368 |
cttcttaaggactgtataaagatgtagagtatgagtttttttttttttttttttataatacagaaagatgtagagccaataagtgtggtgttccctcatg |
24508269 |
T |
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| Q |
413 |
ccaatatgtacgttgtgttccctcc |
437 |
Q |
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| T |
24508268 |
ccaatatgt--gttgtgttccctcc |
24508246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 171 - 437
Target Start/End: Original strand, 847 - 1119
Alignment:
| Q |
171 |
tatatagttaagcttcaacttaacattgcaatgcttttgtatcataaagagaaaatagatttttccttggaatcca-gttccaaatatgaagttttagac |
269 |
Q |
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| T |
847 |
tatatagttaagcttcaacttaacattgcaatgcttttgtatcataaagagaaaatagatttttccatggaatccatgttccaaatatgaagttttagac |
946 |
T |
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| Q |
270 |
aacgagaaagtaaaatattcttcttgaagcgatatgttttttagcggacttcttaaggactgtataaagatgtagagtatga-------nnnnnnnnnnn |
362 |
Q |
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| T |
947 |
aacgagaaaataaaatattcttcttaaagcgatatgttttttaacggacttcttaaggactgtataaagatgtagagtatgatatctttttttttttttt |
1046 |
T |
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| Q |
363 |
nnatataatacagaaagatgtagagccaataagtgtggtgttccttcatgccaatatgtacgttgtgttccctcc |
437 |
Q |
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| T |
1047 |
ttttataatacagaaagatgtagagctaataagtgtggtgttccctcatgccaatatgt--gttgtgttccctcc |
1119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 11519 - 11556
Alignment:
| Q |
247 |
gttccaaatatgaagttttagacaacgagaaagtaaaa |
284 |
Q |
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| T |
11519 |
gttccaaatatgaagttttagacaatgagaaaataaaa |
11556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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