View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6905_low_5 (Length: 399)
Name: NF6905_low_5
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6905_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 37837496 - 37837127
Alignment:
| Q |
19 |
aaatgctactgctaaattccgatttttgagcttgattattctgttgaaagtttacatttcttctgttaagagcatctatcttcaatgaaggtgtcaaaga |
118 |
Q |
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| T |
37837496 |
aaatgctactgctaaattccgatttttgagcttgatttttctgttgaaagtttacatttcttctgttaagagcatctatcttcaatgaaggtgtcaaaga |
37837397 |
T |
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| Q |
119 |
ggatttatatgttgatcaacggcgctgctatacatagctagaaaaatcatcccgaaattcacgaaggctacgtgtcaatattcaaagttgtggggaaaat |
218 |
Q |
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| T |
37837396 |
ggatttatatgttgatgaacggtgctgctatacatagcgagaaaaatcatcccgaaattcacgaaggctacgtgtcaatattcaaagttgtggggaaaat |
37837297 |
T |
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| Q |
219 |
gcatgaggcagcttacaataggaaa-tgggcggaaaacattggtgcttgaccaatagaaatgatttctggacaatttcggaattaactattcgcttgatg |
317 |
Q |
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| T |
37837296 |
gcatgaggcagcttacaataggaaattgggcggaaaacattggtgcttgaccaatagaaatgatttcgggacaatttcggaattaactattcgcttgatg |
37837197 |
T |
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| Q |
318 |
caacattatccattgacgaatctatatctaaatttttctgtttattggtggaaccatgaatcgatgatgt |
387 |
Q |
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| T |
37837196 |
caacattatccgttgacgaatctatatctaaatttttcggtttattggtggaaccatgaatccatgatgt |
37837127 |
T |
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