View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6905_low_6 (Length: 353)
Name: NF6905_low_6
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6905_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 23 - 341
Target Start/End: Complemental strand, 53001405 - 53001087
Alignment:
| Q |
23 |
aacggtataaacatgtttgatcgatccattattgttgtttgttccagatgtatttgattaattaaagtgtatgtgtatgtctatcatttattgttattgt |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53001405 |
aacggtataaacatgtttgatcaatccattattgttgtttgttccagatgtatttgattaattaaagtgtatgtgtatgtctaacatttattgttattgt |
53001306 |
T |
|
| Q |
123 |
tgaaccaatactgaatgatagctatttgatcatatattagttccatctttagttaaatataaaaacacattagtcccaaataatttaagttggttgctgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53001305 |
tgaaccaatactgaatgatagctatttgatcatatattagttccatctttagttaaatataaaaacacattagtcccaaataatttaagttggttgctgc |
53001206 |
T |
|
| Q |
223 |
taacttgtgtttttgaatttctaaaataagcaaaacaagtagagttgtaggtcagnnnnnnnctagcttgtttttgctataaattagggaaagctataac |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53001205 |
taacttgtgtttttgaatttctaaaataagcaaaacaagtagagttgtaggtcagtttttttctagcttgtttttgctataaattagggaaagctataac |
53001106 |
T |
|
| Q |
323 |
cgtaggctttcaatgatgt |
341 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53001105 |
cgtaggctttcaatgatgt |
53001087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University