View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6905_low_7 (Length: 346)

Name: NF6905_low_7
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6905_low_7
NF6905_low_7
[»] chr4 (5 HSPs)
chr4 (1-335)||(26677300-26677636)
chr4 (1-310)||(13980622-13980936)
chr4 (5-51)||(19657914-19657960)
chr4 (1-67)||(54230287-54230353)
chr4 (1-51)||(6409579-6409628)
[»] chr3 (5 HSPs)
chr3 (5-335)||(51266977-51267309)
chr3 (66-292)||(27261146-27261370)
chr3 (1-51)||(14993536-14993586)
chr3 (1-51)||(27741650-27741700)
chr3 (281-335)||(27262041-27262096)
[»] chr7 (4 HSPs)
chr7 (1-259)||(19289933-19290193)
chr7 (1-107)||(3958813-3958919)
chr7 (125-257)||(27844566-27844699)
chr7 (276-331)||(27844699-27844755)
[»] chr8 (3 HSPs)
chr8 (1-108)||(13995217-13995324)
chr8 (159-335)||(13995006-13995184)
chr8 (5-51)||(6443585-6443630)
[»] chr6 (4 HSPs)
chr6 (1-51)||(22577402-22577452)
chr6 (1-51)||(3524064-3524113)
chr6 (1-51)||(21880981-21881030)
chr6 (260-308)||(15150435-15150483)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-43)||(54030-54067)
[»] chr5 (2 HSPs)
chr5 (1-51)||(25444553-25444603)
chr5 (1-51)||(27170620-27170669)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 26677300 - 26677636
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||     
26677300 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccataaaatccgaaactagattatccaagcctaccctgtccataccaccactcaaat 26677399  T
101 accacacttccnnnnnnnnntc-aaccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccac 199  Q
    |||||||||||          | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
26677400 accacacttccaaaaaaaaaaccaaccatcacgcacgcaactatctccatcacaccaagcaaacaccaataacctcgctacccttcccgttggccaccac 26677499  T
200 ctattttgccaccatttagacatcactgaaaacaccgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccacaaaaccg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||    
26677500 ctattttgccaccatttagacatcactgaaaacaccgtaagaaacgattttgatgctccgtctccctactacatcaccgccaccacacaccacaaaaccg 26677599  T
300 ccaccacacaca-aacccgaaacccggttcttctcac 335  Q
    |||||||||||| ||||||||||||||||||||||||    
26677600 ccaccacacacacaacccgaaacccggttcttctcac 26677636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 13980622 - 13980936
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaa-ctagattatccaagcctaccccgtccataccaccactcaaa 99  Q
    |||||||||||||  |||||| ||||||| || |||||||| |||||| |||| |||| |||||||||||||||||||||| |||||| |||||  ||||    
13980622 aaacaaaagttgtgtcaaatcactcaaacgtcctcacaagccgccacagaatctgaaaactagattatccaagcctaccccatccatatcaccatgcaaa 13980721  T
100 aaccaca-cttccnnnnnnnnntcaaccatcacgcacgcaactatct----ccatcacaccaatcaaacaccaataacttcgctacccttcccgttggcc 194  Q
    ||||||| ||||          |||||| ||||||| ||| ||| ||    |||||||||||  |||||||||||||  |||||| || |||||||||||    
13980722 aaccacaacttc--aaaaaccctcaaccgtcacgcaagcagctagctacctccatcacaccacgcaaacaccaataatctcgctaaccctcccgttggcc 13980819  T
195 accacctattttgccaccatttagacatcactgaaaac-accgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccaca 293  Q
    |||||| ||||||||||| |||| ||||||| |||||| | ||||||||||||||  |||||||  ||| ||| ||  |||||| || ||||| ||||||    
13980820 accacccattttgccaccgtttaaacatcaccgaaaacaaacgtaagaaacgattccgatgctccatcttcctactgaatcaccaccaccacacaccaca 13980919  T
294 aaaccgccaccacacac 310  Q
    ||||| |||||||||||    
13980920 aaaccaccaccacacac 13980936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 19657914 - 19657960
Alignment:
5 aaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
19657914 aaaagttgtaccaaattcctcaaacatcatcacaagctgccacaaaa 19657960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 54230287 - 54230353
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattat 67  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||| |||||| ||| ||| |||||    
54230287 aaacaaaagttgtattaaatccttcaaacatcatcacaagctgccataaaatctgaatctaaattat 54230353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6409579 - 6409628
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||||||||    
6409579 aaacaaaagttgcaccaaaatcctcaaacatcatcacaa-ctgccacaaaa 6409628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 51266977 - 51267309
Alignment:
5 aaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaacca 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
51266977 aaaagttgtaccaaattcctcaaatatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccgcgcaaaaacca 51267076  T
105 cacttccnnnnnnnnntc-aaccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctat 203  Q
    |||||||          | ||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||| ||    
51267077 cacttccaaaaaaaaccccaaccatcacgcacgcaactatctccatcacaccacacaaacactaataacctcgctacccttcccgttggccaccacccat 51267176  T
204 tttgccaccatttagacatcactgaaaacaccgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccacaaaaccgccac 303  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||||    
51267177 tttgccaccatttagacatcaccgaaaacaccgtaagaaacgattatgatgcttcgtctccctactacatcaccgccaccacacaccacaaaaccgccac 51267276  T
304 cacacaca-aacccgaaacccggttcttctcac 335  Q
    |||||||| ||||||||| ||||||||||||||    
51267277 cacacacacaacccgaaatccggttcttctcac 51267309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 292
Target Start/End: Original strand, 27261146 - 27261370
Alignment:
66 atccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnntcaaccatcacgcacgcaactatctccatcacaccaatcaaacac 165  Q
    ||||||||||||||| |||| | |||||| |||||||||||| |||          ||||||||||||| |||||||| ||||||||||||  |||||||    
27261146 atccaagcctaccccatccaaaacaccacgcaaaaaccacacctccaaaaaaccc-caaccatcacgcaagcaactatttccatcacaccacgcaaacac 27261244  T
166 caataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaac-accgtaagaaacgattttgatgctctgtctcc 264  Q
    ||||||| |||||| || |||||||| |||||| | ||||||| ||||||||||||||||  ||||| ||||||| ||||  || |||||||| |||| |    
27261245 caataacctcgctaaccctcccgttgaccaccatccattttgctaccatttagacatcaccaaaaacaaccgtaaaaaac--ttatgatgctccgtctgc 27261342  T
265 ctgctacatcaccgccgccacataccac 292  Q
    || ||||||||||||| ||||| |||||    
27261343 ctactacatcaccgccaccacacaccac 27261370  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14993536 - 14993586
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||    
14993536 aaacaaaagttgtaccaaatccctcaaacatcatcacaagccgtcacaaaa 14993586  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27741700 - 27741650
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
27741700 aaacaaaagttgtactaaatccctcaaacatcatcacaagttgccacaaaa 27741650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 27262041 - 27262096
Alignment:
281 gccacataccacaaaaccgccaccacacaca-aacccgaaacccggttcttctcac 335  Q
    |||||| |||||||||||  ||||||||| | ||||||||||||||||||||||||    
27262041 gccacacaccacaaaaccttcaccacacatacaacccgaaacccggttcttctcac 27262096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19289933 - 19290193
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||    
19289933 aaacaaaagttgtaccagatccctcaaacatcatcacaagttgccacaaaatccgaaactagattatccaagcctaccccatccataccaccatgcaaaa 19290032  T
101 accacacttccnnnnnnnnntcaaccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccac 199  Q
    | ||||| |||          ||||||||||||| ||| |||||||||||||||||  ||||||| |||||| ||||| | || ||||||||||||||||    
19290033 atcacacctccaaaacccccccaaccatcacgcaagcagctatctccatcacaccacgcaaacactaataacctcgctaaaccctcccgttggccaccac 19290132  T
200 ctattttgccaccatttagacatcactgaaaac-accgtaagaaacgattttgatgctctg 259  Q
    | ||||| ||||| |||| |||||||  ||| | |||||||||||| ||| ||||||||||    
19290133 ccattttaccaccgtttaaacatcaccaaaagcaaccgtaagaaacaattatgatgctctg 19290193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3958919 - 3958813
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaa 100  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||    
3958919 aaacaaaagttgcaccaaatccctcaaatatcgtcacaagctgccacaaaatccgaaactagattatccacgcctaccccatccatacccccacgcaaaa 3958820  T
101 accacac 107  Q
    |||||||    
3958819 accacac 3958813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 27844566 - 27844699
Alignment:
125 ccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccacctattttgccaccatttagacatc 223  Q
    ||||||| || ||| |||||||||||||||||  |||||||||||||| ||| | | || ||| ||||||| ||||| |||||||||||||||| |||||    
27844566 ccatcacacaagcagctatctccatcacaccacgcaaacaccaataacctcgttaaaccctcctgttggcc-ccacccattttgccaccatttaaacatc 27844664  T
224 actgaaaac-accgtaagaaacgattttgatgctc 257  Q
    ||  ||| | ||||||| |||||||||||||||||    
27844665 accaaaagcaaccgtaaaaaacgattttgatgctc 27844699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 27844699 - 27844755
Alignment:
276 ccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccggttcttc 331  Q
    ||||| ||||| ||||||| |||||||||||||||| ||||||||||||| ||||||    
27844699 ccgccaccacaaaccacaagaccgccaccacacacacaacccgaaacccgtttcttc 27844755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13995324 - 13995217
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaa 100  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||    
13995324 aaacaaaagttgtaccaaatccctcaaacattctcacaagctgccacaaaatccgaaactagattattcaagcctacctcatccataccaccacgcaaaa 13995225  T
101 accacact 108  Q
    ||||||||    
13995224 accacact 13995217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 335
Target Start/End: Complemental strand, 13995184 - 13995006
Alignment:
159 caaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaaca-ccgtaagaaacgattttgatgctc 257  Q
    |||||||||||||| |||||| || |||| |||||||||||| ||||||| ||| |||| |||||||  |||||| ||||||||||||||| | ||||||    
13995184 caaacaccaataacctcgctaaccctcccattggccaccacccattttgcaaccgtttaaacatcaccaaaaacaaccgtaagaaacgattctaatgctc 13995085  T
258 tgtctccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccggttcttctcac 335  Q
    ||||| ||| || |||||||||| ||||| |||||||||||||||||| ||||| ||||  ||||| | ||||||||||    
13995084 tgtcttcctactgcatcaccgccaccacacaccacaaaaccgccaccatacacacaacctaaaacctgtttcttctcac 13995006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 6443585 - 6443630
Alignment:
5 aaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||    
6443585 aaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaa 6443630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22577402 - 22577452
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||    
22577402 aaacaaaggttgtaccaaatccctcaaacatcatcacaagcagccacaaaa 22577452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3524113 - 3524064
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||    
3524113 aaacaaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaa 3524064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21880981 - 21881030
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||||||||    
21880981 aaacaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaa 21881030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 15150435 - 15150483
Alignment:
260 tctccctgctacatcaccgccgccacataccacaaaaccgccaccacac 308  Q
    ||||||| || ||||||| |||||||| ||||||||||||| |||||||    
15150435 tctccctactgcatcaccaccgccacacaccacaaaaccgctaccacac 15150483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 54030 - 54067
Alignment:
6 aaagttgtaccaaatccctcaaacatcatcacaagctg 43  Q
    |||||||||||||| |||||||||||||||||||||||    
54030 aaagttgtaccaaaaccctcaaacatcatcacaagctg 54067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25444603 - 25444553
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||| | |||| ||||||||||||||| |||||||| ||||||    
25444603 aaacaaaagttggatcaaaaccctcaaacatcatcgcaagctgctacaaaa 25444553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27170669 - 27170620
Alignment:
1 aaacaaaagttgtaccaaatccctcaaacatcatcacaagctgccacaaaa 51  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||||||||    
27170669 aaacaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaa 27170620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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