View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6905_low_8 (Length: 286)

Name: NF6905_low_8
Description: NF6905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6905_low_8
NF6905_low_8
[»] chr4 (5 HSPs)
chr4 (1-267)||(1600729-1600996)
chr4 (105-186)||(55908337-55908418)
chr4 (29-187)||(3438186-3438343)
chr4 (105-186)||(1527812-1527893)
chr4 (133-185)||(641321-641373)
[»] chr6 (5 HSPs)
chr6 (116-186)||(7993805-7993875)
chr6 (110-216)||(6588949-6589055)
chr6 (114-180)||(6596567-6596633)
chr6 (27-147)||(8913599-8913723)
chr6 (114-186)||(6432557-6432629)
[»] chr2 (1 HSPs)
chr2 (105-186)||(1037273-1037354)
[»] scaffold0262 (1 HSPs)
scaffold0262 (105-186)||(326-407)
[»] chr1 (2 HSPs)
chr1 (26-154)||(19468038-19468166)
chr1 (77-185)||(33160914-33161022)
[»] scaffold0014 (1 HSPs)
scaffold0014 (157-216)||(89137-89196)
[»] chr5 (1 HSPs)
chr5 (105-216)||(28532084-28532195)
[»] chr8 (1 HSPs)
chr8 (105-215)||(17627668-17627778)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1600996 - 1600729
Alignment:
Q  1 tggctata-ttatactggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgtt 99  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600996 tggctatagttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgtt 1600897  T
Q  100 gccctgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtc 199  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600896 gccttgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtc 1600797  T
Q  200 ctttacttaatgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgta 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600796 ctttacttaatgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgta 1600729  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 55908337 - 55908418
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 186  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 55908418  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 3438186 - 3438343
Alignment:
Q  29 tgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgattt 128  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| | |  | ||| | || ||||||||||||| |  |||| |   ||||| |||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatcttcaaaaa-cttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgattt 3438284  T
Q  129 ggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactca 187  Q
    ||| ||||||||||||||||| |||   ||||||||| ||| |||||| ||| ||||||    
T  3438285 ggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactca 3438343  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 1527812 - 1527893
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 186  Q
    |||| ||||||||||| |||||||| | ||||||||| ||||| |||||  ||  |||||| | | ||||||||||||||||    
T  1527812 gttgtcttcgtttcttagtgatttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactc 1527893  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 641373 - 641321
Alignment:
Q  133 tctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcact 185  Q
    ||||||||||||||| | ||| ||| ||||||| ||||| |||||||||||||    
T  641373 tctataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcact 641321  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 7993805 - 7993875
Alignment:
Q  116 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 186  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 7993875  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 6588949 - 6589055
Alignment:
Q  110 cttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaa 209  Q
    |||| ||||||||||||||||| ||  ||||||||||| | || |||| | ||||||||||||| |||||||||||   |  ||||||||||||||||      
T  6588949 cttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttgg 6589048  T
Q  210 tgagatc 216  Q
    |||||||    
T  6589049 tgagatc 6589055  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 6596567 - 6596633
Alignment:
Q  114 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgttt 180  Q
    |||||||||||||||||||||||||||||||| | | |||   | |||||||||||||||| |||||    
T  6596567 gtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttt 6596633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 8913599 - 8913723
Alignment:
Q  27 tttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattt----tttgaaagatcgccatgttgccctgttgacttcgtttcttgg 122  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||  |  ||||    | |||| ||||  ||||||| |  |||| ||| |||||||||    
T  8913599 tttgttatccaagtgtcaatgtttacaacatttggttcttaatagcacttattttatatatgaatgatcaacatgttgtcaagttgtctttgtttcttgg 8913698  T
Q  123 tgatttggtttctataaaccttagt 147  Q
    | ||||||| |||||||||||||||    
T  8913699 taatttggtgtctataaaccttagt 8913723  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 6432629 - 6432557
Alignment:
Q  114 gtttcttggtgatttggtttctataaaccttagtgaatgtag-tatgctcacagaatcagccttgtttgcactc 186  Q
    |||||||| ||||||||| ||||||||||||||| | ||| | ||| ||||||||||||||| ||||| |||||    
T  6432629 gtttcttgctgatttggtgtctataaaccttagtaattgtcgatat-ctcacagaatcagccctgttttcactc 6432557  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 1037273 - 1037354
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 186  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 1037354  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 407 - 326
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 186  Q
    |||| ||| ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| | ||| || |||||||||||    
T  407 gttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactc 326  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 19468038 - 19468166
Alignment:
Q  26 gtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtga 125  Q
    |||||||||||||||||  | || | |||||||||| |||| || | || |  |||||||| |||| | ||||||    |||| ||| ||||||||||||    
T  19468038 gtttgttatccaagtgtgcaggtttgcaacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtga 19468137  T
Q  126 tttggtttctataaaccttagtgaatgta 154  Q
    ||| || ||||||||||||||||||||||    
T  19468138 tttagtgtctataaaccttagtgaatgta 19468166  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 33161022 - 33160914
Alignment:
Q  77 attttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagcctt 176  Q
    ||||| |||| ||||  |||||||||  |||  ||| |||||||| || |||||| ||||||||||||| || |||| | | ||||||||||||||| ||    
T  33161022 attttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcatt 33160923  T
Q  177 gtttgcact 185  Q
    |||| ||||    
T  33160922 gttttcact 33160914  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 89196 - 89137
Alignment:
Q  157 atgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatc 216  Q
    ||||||||||| ||||||||||||||||||||| |||| | ||||| ||| | |||||||    
T  89196 atgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatc 89137  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 28532195 - 28532084
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 204  Q
    |||| |||||||||||||||||||| | || || ||||||||| | |||  || ||| ||||||||| | ||||||||||||  |  ||| |||||||||    
T  28532195 gttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgtttgcactcgctaggaactgtccttta 28532096  T
Q  205 cttaatgagatc 216  Q
    |||  |||||||    
T  28532095 cttggtgagatc 28532084  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 17627668 - 17627778
Alignment:
Q  105 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 204  Q
    |||| |||| ||||||||| ||||||| ||| ||||||||||| | ||| | ||||||   ||||||||||||||| |||||  |   || ||||||| |    
T  17627668 gttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttca 17627767  T
Q  205 cttaatgagat 215  Q
    |||||||||||    
T  17627768 cttaatgagat 17627778  T

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