View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6906_high_12 (Length: 204)

Name: NF6906_high_12
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6906_high_12
NF6906_high_12
[»] chr4 (3 HSPs)
chr4 (14-177)||(30775278-30775441)
chr4 (14-175)||(35132476-35132637)
chr4 (16-173)||(9335872-9336029)
[»] chr2 (8 HSPs)
chr2 (14-170)||(16661971-16662127)
chr2 (14-173)||(16657496-16657655)
chr2 (14-164)||(12258560-12258710)
chr2 (70-175)||(43625440-43625545)
chr2 (83-140)||(14703471-14703528)
chr2 (19-135)||(12234757-12234873)
chr2 (68-175)||(7542254-7542361)
chr2 (68-164)||(12245439-12245535)
[»] chr7 (21 HSPs)
chr7 (14-176)||(8585685-8585847)
chr7 (14-127)||(8628608-8628721)
chr7 (14-175)||(8659391-8659552)
chr7 (14-175)||(8654478-8654639)
chr7 (16-173)||(8667449-8667606)
chr7 (16-173)||(10494355-10494512)
chr7 (14-176)||(8646904-8647066)
chr7 (14-175)||(27830854-27831015)
chr7 (16-175)||(3147292-3147451)
chr7 (84-176)||(6789539-6789631)
chr7 (16-164)||(8559372-8559520)
chr7 (16-167)||(13333437-13333588)
chr7 (14-175)||(1301488-1301649)
chr7 (14-175)||(8636322-8636483)
chr7 (14-140)||(8602037-8602163)
chr7 (14-139)||(29581820-29581945)
chr7 (14-174)||(7877712-7877872)
chr7 (14-126)||(8590715-8590827)
chr7 (120-176)||(8616708-8616764)
chr7 (14-164)||(8545672-8545822)
chr7 (14-175)||(29577651-29577812)
[»] chr1 (3 HSPs)
chr1 (14-175)||(4678537-4678698)
chr1 (14-139)||(34466772-34466897)
chr1 (85-176)||(15595061-15595152)
[»] chr5 (1 HSPs)
chr5 (83-176)||(28219945-28220038)
[»] chr8 (1 HSPs)
chr8 (82-176)||(43744843-43744937)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 30775441 - 30775278
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30775441 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaactgctggaaacactcacatcgggggagaggactt 30775342  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattacc 177  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30775341 tgataacagaatgttgaattactttgtagaggaatttaagacgaagaacaacgtggacattacc 30775278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 35132637 - 35132476
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||| ||  | || || ||||  ||| |||| ||  ||||||| || ||| | |||||||||||  |||| |||||||||||    
T  35132637 ttggtggtggcacttttgatgtttcaatacttactattaaggataatgtcttccaagttaaggccactgccggaaacactcatctcggtggagaggactt 35132538  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    ||||||||||||| |||||||||||||| | || || ||||  |||||||| || |||||||    
T  35132537 tgataacagaatggtgaactactttgtacaagagttcaagagaaagaacaaagtagacatta 35132476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 9335872 - 9336029
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    ||||| || ||||||||||||||| | ||||| ||||  | |||| | |||||||| ||||| ||  | |||||||| ||| | || || ||||||||||    
T  9335872 ggtggcggtacttttgatgtgtctatcctcacaattaagggtgatctatttgaagtaaaagccaccgcaggaaacacgcaccttggaggcgaggactttg 9335971  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacat 173  Q
    ||||||||||| | ||||| ||||| || || || || | |||||| || ||||||||    
T  9335972 ataacagaatggttaactattttgtggaagagttaaaaaagaagaataaagtggacat 9336029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 16661971 - 16662127
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  16661971 ttggtggtgggacttttgatgtgtctctcctcacaattaaaggtgatgtctttgaagttaaagccacttctggaaacactcacctcgggggagaggactt 16662070  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtgga 170  Q
    |||||||||||||||||||||||||||  | |||||||| | ||||||||| |||||    
T  16662071 tgataacagaatgttgaactactttgtgaaagaatttaataggaagaacaaagtgga 16662127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 16657496 - 16657655
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||| ||||| ||||||||||||||| | || || ||||  | |||||| ||||| || ||||| ||| | |||||||||||| | ||||||||||||||    
T  16657496 ttggcggtggtacttttgatgtgtctatccttacaattaagggtgatgtttttgaggtaaaagccactgccggaaacactcaccttgggggagaggactt 16657595  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacat 173  Q
    ||||||||||| | ||||||||||||||||||| ||| | | |||||| || ||||||||    
T  16657596 tgataacagaacggtgaactactttgtagaggagtttcaaaagaagaataaggtggacat 16657655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 12258560 - 12258710
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||||||||| || |||||||  ||| |||| ||| ||||||| || ||  |||||||||| ||| | || |||||||||||    
T  12258560 ttggtggtggcacttttgatgtgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaggagaggactt 12258659  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaa 164  Q
    |||||| |||||| |||  ||||||||||| || || ||||  ||||||||    
T  12258660 tgataatagaatggtgagttactttgtagaagagttcaagagaaagaacaa 12258710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 43625545 - 43625440
Alignment:
Q  70 gttaaagcaacttctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtgg 169  Q
    |||||||| ||| |||||||||||||| | || ||||||||||||||| | |||||| |||||||||||| ||| |||||| ||| ||||||||| ||||    
T  43625545 gttaaagccactgctggaaacactcaccttggaggagaggactttgatgatagaatggtgaactactttgcagaagaatttgagaagaagaacaatgtgg 43625446  T
Q  170 acatta 175  Q
    | ||||    
T  43625445 atatta 43625440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 14703528 - 14703471
Alignment:
Q  83 ctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgt 140  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  14703528 ctggaaacactcacctcgggggagaggacttcgataacagaatggtgaactactttgt 14703471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 12234873 - 12234757
Alignment:
Q  19 ggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttgata 118  Q
    ||||| ||||||||||||||||| || || || | || | |||| ||  |||||||||| ||  | |||||||||||| |||||||||||||||||||||    
T  12234873 ggtggcacttttgatgtgtctctcctaacaatcaaaggtaatgtcttccaagttaaagccacagccggaaacactcacctcgggggagaggactttgata 12234774  T
Q  119 acagaatgttgaactac 135  Q
    |||||||| | ||||||    
T  12234773 acagaatggtaaactac 12234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 7542361 - 7542254
Alignment:
Q  68 aagttaaagcaacttctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgt 167  Q
    ||||||| || ||| |||| ||||||||| | || ||||| ||||||||||| ||||||  ||||||||||||| | || || ||||  |||||||| ||    
T  7542361 aagttaaggccactgctggcaacactcaccttggtggagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaacaaagt 7542262  T
Q  168 ggacatta 175  Q
    ||||||||    
T  7542261 ggacatta 7542254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 12245439 - 12245535
Alignment:
Q  68 aagttaaagcaacttctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaa 164  Q
    ||||||| || ||| |||||||||||||| | || |||||||| |||||||| |||||| | |||||||||| | |||| || ||||  ||||||||    
T  12245439 aagttaaggccactgctggaaacactcaccttggaggagaggattttgataatagaatggtaaactactttgcacaggagttcaagagaaagaacaa 12245535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 8585685 - 8585847
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||| |||||||||||||||||  ||||||| |||||| | ||||||| ||||||    
T  8585685 ttggtggtgggacttttgatgtgtctctcctcacaattaaaggtgatgtctttgaagttaaagcaaccgctggaaatactcaccttgggggaggggactt 8585784  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||| |||||    
T  8585785 tgataacagaatgttgaactactttgttgaggaatttaagagaaagaacaatgtggatattac 8585847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 8628721 - 8628608
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||||||||||||||||||||| ||||| |||| || |||||| |||||||||||||| ||| ||||||| |||||| | || |||||||||||    
T  8628721 ttggtggtgggacttttgatgtgtctctcctcacaattaaaggtgatgtctttgaagttaaagccactgctggaaatactcaccttggtggagaggactt 8628622  T
Q  114 tgataacagaatgt 127  Q
    ||||||||||||||    
T  8628621 tgataacagaatgt 8628608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 8659552 - 8659391
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||||||| | || || || |  | |||||| |||||||| ||||| |||||||||||||||||| | || |||||||||||    
T  8659552 ttggtggtggtacttttgatgtgtctatccttacaatgaagggtgatgtctttgaagtaaaagccacttctggaaacactcaccttggaggagaggactt 8659453  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    ||||| ||||||| ||||||||||||||||||| || || | |||||| || ||||||||||    
T  8659452 tgatagcagaatggtgaactactttgtagaggagttcaaaaagaagaataaagtggacatta 8659391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 8654639 - 8654478
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||||||| | ||||| ||||  | |||||| ||||| || ||||| ||| |||||||||| ||| | |||||||| |||||    
T  8654639 ttggtggtggtacttttgatgtgtctatactcacaattaagggtgatgtctttgacgtaaaagccactgctggaaacacgcacctagggggagaagactt 8654540  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    ||||||||||||| || |||||||||||||||| || || | |||||| || ||||| ||||    
T  8654539 tgataacagaatggtgtactactttgtagaggagttcaaaaagaagaataaagtggaaatta 8654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 8667606 - 8667449
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    ||||| |||||||||||||||||| | ||||| ||||  | |||||| |||||||| ||||| ||| | |||||||||||| | ||||| |||||||| |    
T  8667606 ggtggcgggacttttgatgtgtctatcctcacaattaagggtgatgtctttgaagtgaaagccactgcaggaaacactcaccttgggggcgaggacttcg 8667507  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacat 173  Q
    ||||||||||| ||||||| ||||| ||||| || || | |||||| || ||||||||    
T  8667506 ataacagaatggtgaactattttgttgaggagttaaaaaagaagaataaagtggacat 8667449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 10494355 - 10494512
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    |||||||| ||||||||||||||| | ||||| ||||  | |||||| |||||||| ||||| ||| | || ||||||||| | |||||||||||||| |    
T  10494355 ggtggtggtacttttgatgtgtctatcctcacaattaagggtgatgtctttgaagtaaaagccactgcaggtaacactcaccttgggggagaggacttcg 10494454  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacat 173  Q
    ||||||||||| |||| || ||||| ||||| || || | |||||| |||||||||||    
T  10494455 ataacagaatggtgaattattttgttgaggagttcaaaaagaagaataacgtggacat 10494512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 8647066 - 8646904
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||||||||| || || ||||  ||| | || ||| | |||||||| ||  |||||||||||||| |||| |||||||||||    
T  8647066 ttggtggtggaacttttgatgtgtctctccttacaattaaggataaggtctttcatgttaaagccaccgctggaaacactcacctcggaggagaggactt 8646967  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    |||||  |||||| || || |||||| | | |||||||| | ||||||||| |||||||||||    
T  8646966 tgatagtagaatggtggaccactttgcacaagaatttaacaagaagaacaaggtggacattac 8646904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 27830854 - 27831015
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    ||||||||||||||||||||||||||||| | || ||||  ||| | || ||  ||||||| |||||| |||||||||||||| | || |||||||||||    
T  27830854 ttggtggtgggacttttgatgtgtctcttgttacaattaaggataaggtcttccaagttaaggcaactgctggaaacactcaccttggtggagaggactt 27830953  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    |||||| || ||| ||||||| ||||| ||||  || |||| |||||| |  ||||||||||    
T  27830954 tgataataggatggtgaactattttgtggaggtgttcaagaagaagaaaagagtggacatta 27831015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 3147451 - 3147292
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    ||||||||||||||||||||||||||||| || ||||  ||| | || ||| ||||||| || |   | |||||||| ||| | ||||||||||||||||    
T  3147451 ggtggtgggacttttgatgtgtctcttcttacaattaaggataaggtctttcaagttaaggccatcgcaggaaacacccaccttgggggagaggactttg 3147352  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    |||| || ||| |||||||||||| |  ||| ||||||| ||||||||| || |||||||    
T  3147351 ataataggatggtgaactactttgcacgggagtttaagaagaagaacaaggtagacatta 3147292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 6789631 - 6789539
Alignment:
Q  84 tggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    ||||||||||||| |||| |||||||||||||||||| || || | |||||||||| |||||| ||||||| ||||||||| ||||| |||||    
T  6789631 tggaaacactcacctcggaggagaggactttgataaccgattggtaaactactttgcagaggagtttaagaggaagaacaaagtggatattac 6789539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 8559520 - 8559372
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    |||||||| ||||||||||| ||||||||||| ||||   || || | |||||||| || || ||||| ||| |||| ||| |||| |||||||||||||    
T  8559520 ggtggtggaacttttgatgtttctcttctcacaattaagaataatctctttgaagtcaaggccacttccggagacacacacctcggaggagaggactttg 8559421  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaa 164  Q
    ||||||||||| ||||  |||||||| | || ||| ||| |||||||||    
T  8559420 ataacagaatggtgaaacactttgtaaaagagtttgagaggaagaacaa 8559372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 13333437 - 13333588
Alignment:
Q  16 ggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactttg 115  Q
    |||||||| ||||||||||||||| | || || ||||  | |||||| |||||||| ||||| ||  | |||||||||||| | |||||||| ||||| |    
T  13333437 ggtggtggtacttttgatgtgtctatccttacaattatgggtgatgtctttgaagtaaaagccaccgcaggaaacactcaccttgggggagaagacttcg 13333536  T
Q  116 ataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgt 167  Q
    ||||||||||| ||||||| ||||| ||||| || || | |||||| |||||    
T  13333537 ataacagaatggtgaactattttgttgaggagttcaaaaagaagaataacgt 13333588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 1301649 - 1301488
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||| ||||| ||||||||||||||| | || ||||| |  |  ||||| |||||||| ||||| |||  |||||| |||||| | || |||||||||||    
T  1301649 ttggcggtggtacttttgatgtgtctatccttaccatcaagggcgatgtctttgaagtaaaagccactggtggaaatactcaccttggaggagaggactt 1301550  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    |||||| |||||| ||| ||||||||||||||| || |  | |||||| || ||||||||||    
T  1301549 tgataatagaatggtgagctactttgtagaggagttcagaaagaagaataaagtggacatta 1301488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 8636322 - 8636483
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| || || || |||||| | ||||  |||| || ||| || |||||||||||||| ||| | ||| |||| ||| | || |||||||||||    
T  8636322 ttggtggtggtacattcgacgtgtctatactcaaaattaaaggtgaagtctttgaagttaaagccactgccggagacacacaccttggaggagaggactt 8636421  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    ||||||||||||| || | || |||||||||||| | |||| ||||||||| || |||||||    
T  8636422 tgataacagaatggtggaatattttgtagaggaaatcaagaggaagaacaaggtagacatta 8636483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 8602163 - 8602037
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||| ||||||||||| ||||   || || | |||||||| || || ||||| ||| |||| ||| | || |||||||||||    
T  8602163 ttggtggtggaacttttgatgtttctcttctcacaattaagaataatctctttgaagtcaaggccacttccggagacacacaccttggaggagaggactt 8602064  T
Q  114 tgataacagaatgttgaactactttgt 140  Q
    ||||||| ||||| ||||| |||||||    
T  8602063 tgataaccgaatggtgaaccactttgt 8602037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 29581820 - 29581945
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| |||||||||||||||||||||||  | |  ||||||  ||||||||| || || ||| ||||  | |||||| | || |||||||||||    
T  29581820 ttggtggtggcacttttgatgtgtctcttctcacactcaaggatgataagtttgaagtgaaggccactgctggcgatactcacctaggaggagaggactt 29581919  T
Q  114 tgataacagaatgttgaactactttg 139  Q
    ||||||| ||||| |||| |||||||    
T  29581920 tgataaccgaatggtgaattactttg 29581945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 7877712 - 7877872
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||| |||||||||||||||||  | | |||||||   ||||| || | ||| ||| | ||| | |||||| | || |||||||||||    
T  7877712 ttggtggtggcactttcgatgtgtctcttctcacactaaaagatgatagctttgatgtaatagctactgccggagatactcacctaggtggagaggactt 7877811  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatt 174  Q
    ||||||||||||||||||| | || ||   ||| ||||||| |||||| || |||||||||    
T  7877812 tgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacatt 7877872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 8590827 - 8590715
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| |||||||||||||||||||||||  | | || ||||   ||||| || ||||| ||||| ||| | || ||| | || |||||||||||    
T  8590827 ttggtggtggcacttttgatgtgtctcttctcacactcaaaggtgatagctttgatgtaaaagccacttccggagatacccacctaggaggagaggactt 8590728  T
Q  114 tgataacagaatg 126  Q
    |||||||||||||    
T  8590727 tgataacagaatg 8590715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 8616764 - 8616708
Alignment:
Q  120 cagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| |||||    
T  8616764 cagaatgttgaactactttgttgaggattttaagaggaagaacaatgtggatattac 8616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 8545822 - 8545672
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||| ||||| ||||||||||||||| |||| || |||| | || | || ||||| || || || ||| ||||| ||||| || | || || || |||||    
T  8545822 ttggcggtggaacttttgatgtgtctattcttacaattaaaaataaggtctttgatgtcaaggccactgctggagacacttacctaggcggtgaagactt 8545723  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaa 164  Q
    ||||||||||||| |||| ||||||||  |||| || |||| |||||||||    
T  8545722 tgataacagaatggtgaattactttgtgaaggagttcaagaggaagaacaa 8545672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 29577651 - 29577812
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| || ||||||||||||||||||||  |||  ||||||   |||||||| || || ||| ||||  | |||||| | || |||||||||||    
T  29577651 ttggtggtggcacctttgatgtgtctcttctcacacttaaggatgatagttttgaagtaaaggccactgctggtgatactcacctaggaggagaggactt 29577750  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
     ||||| | |||| ||| | |||||||  | || || |||| ||||||||| ||||||||||    
T  29577751 cgataataaaatggtgagccactttgtgaatgagttgaagaggaagaacaatgtggacatta 29577812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 4678537 - 4678698
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||| ||||||||||||||| | || |  || |  | || ||| |||||||| ||||| ||| |||||||||||||| | || |||||||||||    
T  4678537 ttggtggtggtacttttgatgtgtctatccttaaaatcaagggtggtgtctttgaagtaaaagccactgctggaaacactcacctaggtggagaggactt 4678636  T
Q  114 tgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacatta 175  Q
    ||||||||||||| ||||||||||||||||||| || || | |||||| || ||||||||||    
T  4678637 tgataacagaatggtgaactactttgtagaggagttcaaaaagaagaataatgtggacatta 4678698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 34466772 - 34466897
Alignment:
Q  14 ttggtggtgggacttttgatgtgtctcttctcaccattagagatgatgtgtttgaagttaaagcaacttctggaaacactcacatcgggggagaggactt 113  Q
    |||||||||||||||||||||||||||| || || ||||  ||| |||| ||||||||||| || |||||||| ||||||||| ||||  ||||||||||    
T  34466772 ttggtggtgggacttttgatgtgtctctccttacaattaaggataatgtctttgaagttaaggccacttctggtaacactcacctcggacgagaggactt 34466871  T
Q  114 tgataacagaatgttgaactactttg 139  Q
    |||||| ||||||  |||| ||||||    
T  34466872 tgataatagaatggcgaaccactttg 34466897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 15595152 - 15595061
Alignment:
Q  85 ggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    |||||||||||| | || |||||||||||||||||||||||| | ||||||||||   ||||||| |||||||||||||| ||||| |||||    
T  15595152 ggaaacactcaccttggaggagaggactttgataacagaatggtcaactactttgcgcaggaattcaagacgaagaacaaagtggatattac 15595061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 28220038 - 28219945
Alignment:
Q  83 ctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    |||||||||||||| |||||||||||||||||||||  || ||| |||||||||| | |||||| ||||||| ||||||||| |||||||||||    
T  28220038 ctggaaacactcacctcgggggagaggactttgatagtaggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattac 28219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 43744937 - 43744843
Alignment:
Q  82 tctggaaacactcacatcgggggagaggactttgataacagaatgttgaactactttgtagaggaatttaagacgaagaacaacgtggacattac 176  Q
    ||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||| | |||||| ||||||| ||||||||| |||||||||||    
T  43744937 tctggaaacactcacctcggaggagaggattttgataataggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattac 43744843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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