View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6906_low_1 (Length: 633)
Name: NF6906_low_1
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 12 - 616
Target Start/End: Complemental strand, 16961935 - 16961331
Alignment:
| Q |
12 |
aacctgtgtagtgtacttatttatccaactctatcttttttctccacttgaagaaataatggcaaaaccatttccacattcacaacacctactcctcttc |
111 |
Q |
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| T |
16961935 |
aacctgtgtagtgtacttatttatccaactctatcttttttctccacttgaagaaataatggcaaaaccatttccacattcacaacacctactcctcttc |
16961836 |
T |
|
| Q |
112 |
atcttcttcctttccaccattcatctctcacaacagttacaattttctcagtctcaaacactttacaaacttcaagaaattcttggctacccttcatcac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961835 |
atcttcttcctttccaccattcatctctcacaacagttacaattttctcagtctcaaacactttacaaacttcaagaaattcttggctacccttcatcac |
16961736 |
T |
|
| Q |
212 |
taaaaaccttaagcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgt |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961735 |
taaaaacattaagcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgt |
16961636 |
T |
|
| Q |
312 |
tggaaacaacaatgagtttacttcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttg |
411 |
Q |
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|||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961635 |
tggaaacaccaatgagttcacctcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttg |
16961536 |
T |
|
| Q |
412 |
gtttctcttggtttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaatac |
511 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961535 |
gtttcacttggtttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaatac |
16961436 |
T |
|
| Q |
512 |
catctcagctttcacatcttaacaatcttcaatcactagtacttgatgataatcatttcaatggtcaaattccaaatattttaggctcacttcatggttt |
611 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961435 |
catctcaactttcacatcttaacaatcttcaatcattagtacttgatgataaccatttcaatggtcaaattccaaatattttaggctcacttcatggttt |
16961336 |
T |
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| Q |
612 |
agttg |
616 |
Q |
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| T |
16961335 |
agttg |
16961331 |
T |
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