View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6906_low_11 (Length: 242)
Name: NF6906_low_11
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 20108867 - 20108644
Alignment:
| Q |
9 |
ggacatcaagtggtacaaggtacgtacgaacgtgtcacataca-attatgcatgcatgtatatgaaaaaagatcatacgatatttgtaaggcaaaactgt |
107 |
Q |
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| T |
20108867 |
ggacatcaagtggtacaaggtacgtacgaacgtgtcacatacatattatgcatgcatgtatatgaaaaaagatcatatgatatttttaaggcaaaactgt |
20108768 |
T |
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| Q |
108 |
atcaattatcttatatcttataatttaattataatttcaacatagggttatgtgtcaaaatagagaccataaaactaatctctgattaaaagtggctgta |
207 |
Q |
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| T |
20108767 |
atcaattatcttatatcttata-----------atttcaacatagggttatgtatcaaaatagagaccataaaactaatctctgattaaaagtggttgta |
20108679 |
T |
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| Q |
208 |
aagtaggtttcaatacattttattcaaagttcctt |
242 |
Q |
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| T |
20108678 |
aagtaggtttcaatacattttattcaaagttcctt |
20108644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 88 - 242
Target Start/End: Complemental strand, 20080072 - 20079918
Alignment:
| Q |
88 |
tatttgtaaggcaaaactgtatcaattatcttatatcttataatttaattataatttcaacatagggttatgtgtcaaaatagagaccataaaactaatc |
187 |
Q |
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| T |
20080072 |
tatttttaaggcaaaactgtatcaattatcttatatcttataatttaattataatttcaacatagggttgtgtatcaaaatagagaccataaaacttagc |
20079973 |
T |
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| Q |
188 |
tctgattaaaagtggctgtaaagtaggtttcaatacattttattcaaagttcctt |
242 |
Q |
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| T |
20079972 |
tctgattaaaagtggttgtaaagtaggtttcaatacattttattcaaagttcctt |
20079918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 20080345 - 20080256
Alignment:
| Q |
9 |
ggacatcaagtggtacaaggtacgtacgaacgtgtcacataca-attatgcatgcatgtatatgaaaaaagatcatacgatatttgtaag |
97 |
Q |
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| T |
20080345 |
ggacatcaagtggtacaaggtacgtacgaacatgtcacatacatcttatgcatgcatgtatatgaaaagagatcatatgatatttttaag |
20080256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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