View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6906_low_12 (Length: 240)
Name: NF6906_low_12
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_12 |
 | |
|
| [»] scaffold0166 (1 HSPs) |
| | |
|
| [»] scaffold0662 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 45346919 - 45346706
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataattc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45346919 |
tatcatagagatttgtcgtctcaatttgataaaaaattactttttaattgctggaaattaattaaaagcatagttgctcttgattcaatctgtataattc |
45346820 |
T |
|
| Q |
109 |
tgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346819 |
tgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctacttgtgtccatcaagagttggatttaaattagggtaattgact |
45346720 |
T |
|
| Q |
209 |
tttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45346719 |
tttgtgttgattag |
45346706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 12982970 - 12983182
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12982970 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
12983069 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12983070 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
12983167 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12983168 |
ttttgtgttgattag |
12983182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 45320167 - 45320119
Alignment:
| Q |
170 |
tgtccatcaagagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45320167 |
tgtccatcaagtgttggatttaaattagggtaattgacttttgtgttga |
45320119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 39242212 - 39242250
Alignment:
| Q |
180 |
gagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39242212 |
gagttggatttaaattagggtaattgacttttgtgttga |
39242250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 45320221 - 45320171
Alignment:
| Q |
69 |
actaaaagcatagctgctcttgattcaatctgtataattctgcaactaatc |
119 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
45320221 |
actagaagcatagctgctcctgattcaatctgtacaattctgcaactaatc |
45320171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 17015645 - 17015683
Alignment:
| Q |
180 |
gagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17015645 |
gagttggatttaaattagggtaattgactttcgtgttga |
17015683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 25753 - 25538
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa--ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25753 |
tatcatagagatttgtcgtctcaatttgataaaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
25654 |
T |
|
| Q |
107 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25653 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctacttgtgtccatcaagagttggatttaaattagggtaattga |
25554 |
T |
|
| Q |
207 |
cttttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25553 |
cttttgtgttgattag |
25538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 24783370 - 24783155
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa--ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24783370 |
tatcatagagatttgtcgtctcaatttgataaaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
24783271 |
T |
|
| Q |
107 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24783270 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctacttgtgtccatcaagagttggatttaaattagggtaattga |
24783171 |
T |
|
| Q |
207 |
cttttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24783170 |
cttttgtgttgattag |
24783155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 55918046 - 55917832
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55918046 |
tatcatagagatttgtcgtctcaatttaataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
55917947 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55917946 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctacttgtgtccatcaagagttggatttaaattagggtaattgac |
55917847 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
55917846 |
ttttgtgttgattag |
55917832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 28682477 - 28682685
Alignment:
| Q |
14 |
tagagatttgtcgtctcaatttgataaataattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataattctgcaa |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28682477 |
tagagttttgtcgtctcaatttgataaataattactttttaattgctgtaaattaactaaaagcatagctgctcctgattcaatctgtataattctgcaa |
28682576 |
T |
|
| Q |
114 |
ctaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgacttttgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28682577 |
ctaatccactgagagtatatattgtcgcatagcagcagcaattcacactctgtttgtatccatcaagagttggatttaaattagggtaattgacttttgt |
28682676 |
T |
|
| Q |
214 |
gttgattag |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
28682677 |
gttgattag |
28682685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 20134861 - 20135073
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20134861 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgatttaatctgtataatt |
20134960 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134961 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
20135058 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20135059 |
ttttgtgttgattag |
20135073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 42063552 - 42063504
Alignment:
| Q |
170 |
tgtccatcaagagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42063552 |
tgtccatcaagtgttggatttaaattagggtaattgacttttgtgttga |
42063504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 47028651 - 47028603
Alignment:
| Q |
170 |
tgtccatcaagagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47028651 |
tgtccatcaagtgttggatttaaattagggtaattgacttttgtgttga |
47028603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 47028705 - 47028655
Alignment:
| Q |
69 |
actaaaagcatagctgctcttgattcaatctgtataattctgcaactaatc |
119 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
47028705 |
actagaagcatagctgctcctgattcaatctgtacaattctgcaactaatc |
47028655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 42063607 - 42063556
Alignment:
| Q |
68 |
aactaaaagcatagctgctcttgattcaatctgtataattctgcaactaatc |
119 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
42063607 |
aactagaaggatagctgctcctgattcaatatgtacaattctgcaactaatc |
42063556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 15332176 - 15332391
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa--ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15332176 |
tatcatagagatttgtcgtctcaatttgataaaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
15332275 |
T |
|
| Q |
107 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15332276 |
tctgcaactaatccactgagagtatatattgttgcatagcagccgcaattaacactctacttgtgtccatcaagagttggatttaaattagggtaattga |
15332375 |
T |
|
| Q |
207 |
cttttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15332376 |
cttttgtgttgattag |
15332391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 17692058 - 17692271
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa--ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17692058 |
tatcatagagatttgtcgtctcaatttgataaaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
17692157 |
T |
|
| Q |
107 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17692158 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattga |
17692255 |
T |
|
| Q |
207 |
cttttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17692256 |
cttttgtgttgattag |
17692271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 16431316 - 16431528
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16431316 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatatgtataatt |
16431415 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16431416 |
ctgcaactaatccactgagagtatatattgtcgcataacagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
16431513 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16431514 |
ttttgtgttgattag |
16431528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 37260325 - 37260113
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37260325 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatatgtataatt |
37260226 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37260225 |
ctgcaactaatccactgagagtatatattgtcgcataacagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
37260128 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37260127 |
ttttgtgttgattag |
37260113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 533134 - 533346
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
533134 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
533233 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
533234 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
533331 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
533332 |
ttttgtgttgattag |
533346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 45973873 - 45974085
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa-ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45973873 |
tatcatagagatttgtcgtctcaatttgataaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataatt |
45973972 |
T |
|
| Q |
108 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45973973 |
ctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattgac |
45974070 |
T |
|
| Q |
208 |
ttttgtgttgattag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45974071 |
ttttgtgttgattag |
45974085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 39831856 - 39831643
Alignment:
| Q |
9 |
tatcatagagatttgtcgtctcaatttgataaataa--ttactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39831856 |
tatcatagagatttgtcgtctcaatttgataaaaaaaattactttttaattgctggaaattaactaaaagcatagctgctcttgattcaatctgtataat |
39831757 |
T |
|
| Q |
107 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtccatcaagagttggatttaaattagggtaattga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39831756 |
tctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattaacactctact--tgtccatcaagagttggatttaaattagggtaattga |
39831659 |
T |
|
| Q |
207 |
cttttgtgttgattag |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39831658 |
cttttgtgttgattag |
39831643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 15063900 - 15063763
Alignment:
| Q |
75 |
agcatagctgctcttgattcaatctgtataattctgcaactaatccactgagagtatatattgtcgcatagcagccgcaattcacactctgcttgtgtcc |
174 |
Q |
| |
|
||||||| |||| ||||||| | |||| |||| || ||||||||||| ||||||||||||||| |||||||||| |||||||| || || ||||||||| |
|
|
| T |
15063900 |
agcatagatgctactgattcattttgtacaattatggaactaatccaccgagagtatatattgtggcatagcagcagcaattcagaccctacttgtgtcc |
15063801 |
T |
|
| Q |
175 |
atcaagagttggatttaaattagggtaattgacttttg |
212 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
15063800 |
accgagagttggatttaaattaggggaattgacttttg |
15063763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 7530 - 7482
Alignment:
| Q |
170 |
tgtccatcaagagttggatttaaattagggtaattgacttttgtgttga |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530 |
tgtccatcaagtgttggatttaaattagggtaattgacttttgtgttga |
7482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 7584 - 7534
Alignment:
| Q |
69 |
actaaaagcatagctgctcttgattcaatctgtataattctgcaactaatc |
119 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
7584 |
actagaagcatagctgctcctgattcaatctgtacaattctgcaactaatc |
7534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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