View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6906_low_15 (Length: 204)
Name: NF6906_low_15
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 24932402 - 24932285
Alignment:
| Q |
43 |
atcaagttttgttcaaaattgacattcaacaatgacaattggaatggtaatgtatactcatttcaattacaatgtcaagtataattctttgtattctttt |
142 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24932402 |
atcaagttttgttcaaaattgacattcagcaatgacaattggaatggtaatgtatactcatttcaattacaatgtcaagtataattctttgtattctttt |
24932303 |
T |
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| Q |
143 |
catattacaatttttgtc |
160 |
Q |
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||||||| |||||||||| |
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| T |
24932302 |
catattaaaatttttgtc |
24932285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 25681894 - 25681777
Alignment:
| Q |
43 |
atcaagttttgttcaaaattgacattcaacaatgacaattggaatggtaatgtatactcatttcaattacaatgtcaagtataattctttgtattctttt |
142 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
25681894 |
atcaagttttgttcaaaattgacattcagcaatgacaattggaatggtaatgtatactcatttcaattacaatgtcaagtaaaatactttgtattctttt |
25681795 |
T |
|
| Q |
143 |
catattacaatttttgtc |
160 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
25681794 |
catattacaatttttgtc |
25681777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 35129458 - 35129506
Alignment:
| Q |
84 |
gaatggtaatgtatactcatttcaattacaatgtcaagtataattcttt |
132 |
Q |
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|||||||||||||||| || |||||||||||||||| | ||||||||| |
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|
| T |
35129458 |
gaatggtaatgtatacccacctcaattacaatgtcaattttaattcttt |
35129506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 35654479 - 35654431
Alignment:
| Q |
84 |
gaatggtaatgtatactcatttcaattacaatgtcaagtataattcttt |
132 |
Q |
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|
||||||||| | ||||||||||||||||||||| ||| | ||||||||| |
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|
| T |
35654479 |
gaatggtaaagcatactcatttcaattacaatgccaattttaattcttt |
35654431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 12822814 - 12822844
Alignment:
| Q |
85 |
aatggtaatgtatactcatttcaattacaat |
115 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12822814 |
aatggtaatgtatactcatttcaattacaat |
12822844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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