View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6906_low_2 (Length: 526)
Name: NF6906_low_2
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 519
Target Start/End: Original strand, 7296090 - 7296601
Alignment:
| Q |
15 |
aatattacaccacaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcacaaaatagaaaa |
114 |
Q |
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| T |
7296090 |
aatattacaccacaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcaaaaaatagaaaa |
7296189 |
T |
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| Q |
115 |
ttctacgaaggtggttcatgtttgtattacgagtacttttcgaaccccttcctttatatgttattttaggtgagtgttgttgttgtt---tatatttagg |
211 |
Q |
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| T |
7296190 |
ttctacgaaggtggttcatgtttgtattacgagtgcttttcgaaccccttcctttatatgttattttaggtgattgttgttgttgttgtttatatttagg |
7296289 |
T |
|
| Q |
212 |
tcgaatttccctaatacttctcctcggttaatgagtcaagtattaactatatgtctttnnnnnnnnnnnnnn----cttctatatatatcattttatcat |
307 |
Q |
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| T |
7296290 |
tcgaatatccttgatacttctcctcagttgatgagtcaagtattaactatatttctttaaaaaaaaaaaaaaaaatcttctatatatatcattttgtcat |
7296389 |
T |
|
| Q |
308 |
tcaaaataaagaacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggatgatgcattca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7296390 |
tcaaaataaagaacaaagtaattagaacataaaatacaaggagaggagtctccgtaatcctccgacggaaccctctccatcaccatggataatgcattca |
7296489 |
T |
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| Q |
408 |
aggtgattcaaacccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttat |
507 |
Q |
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| T |
7296490 |
aggtgattcaaacccttaatttctacctttcagaacacccttctatagttggatttcgatggagtcacactcaatcttggggttcaacatggtcttttat |
7296589 |
T |
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| Q |
508 |
cttgatgtccat |
519 |
Q |
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| T |
7296590 |
ctttatgtccat |
7296601 |
T |
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