View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6906_low_3 (Length: 391)
Name: NF6906_low_3
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 46864553 - 46864888
Alignment:
| Q |
15 |
acatcatatacgtgtgatagacatatatttctaacacctttaaatttaaatgaagatccattatcaatccacttgtatggttgatcaaaatctaacacaa |
114 |
Q |
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| T |
46864553 |
acatcatatacatgtgat-gacatatatttctaacacctttaaatttaaatgaagatccgttatcaatctacttgtatggttgatcaaaatctaacacaa |
46864651 |
T |
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| Q |
115 |
ttattatcatacttcttatgactcaacaaatatgaatagtataacaatgtaataaaaaagaggtgctcaaattctcaatatacggtccaaagtacttcaa |
214 |
Q |
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| T |
46864652 |
ttattctcatacttcttatgactcaacaaatattaatagtataacaatgtaataaaaaaaaggtgctcaaattctcaatatacggtccaaattacttcaa |
46864751 |
T |
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| Q |
215 |
gacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtggataacatttcagtgacattgaggtgctaat |
314 |
Q |
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| T |
46864752 |
gacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtgggtaatattttggtgacattgaggtgccaat |
46864851 |
T |
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| Q |
315 |
atcatgtgtcattgatcaactataacatcacaagtgt |
351 |
Q |
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| T |
46864852 |
atcatgtgacattaatcaactataacatcacaagtgt |
46864888 |
T |
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