View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6906_low_6 (Length: 315)

Name: NF6906_low_6
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6906_low_6
NF6906_low_6
[»] chr7 (1 HSPs)
chr7 (17-306)||(44034364-44034658)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 44034658 - 44034364
Alignment:
Q  17 aaaccccttatcagttccctcactgtgtgactcatgggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatcca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44034658 aaaccccttatcagttccctcactgtgtgactcatgggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatcca 44034559  T
Q  117 tatttctatgaaggtaggtagcta--tatatt-----gatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttatac 209  Q
    |  |||||||||||||||||| ||  ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44034558 t--ttctatgaaggtaggtaggtagctatattatgatgatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttatac 44034461  T
Q  210 cagaatggattgtttacacatataggagaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattcccttaacctgcacaggtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44034460 cagaatggattgtttacacatataggagaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattcccttaacctgcacaggtt 44034364  T

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