View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6906_low_8 (Length: 275)
Name: NF6906_low_8
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6906_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 11420076 - 11420332
Alignment:
| Q |
1 |
attcaatttcgaaagaaatcgatcaataatattgacacaaagataaagtgtttccggggctaggtttagggcatagtgtgcatctattatagaatctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11420076 |
attcaatttcgaaagaaatcgatcaataatattgacacaaagataaagtgtttccggggctaggtttagggcatagtgtgcatctattatagaatctatt |
11420175 |
T |
|
| Q |
101 |
aaaaattttctttcttcacaatttatccttgccccgtataaattggtgctaatttgacactcttcaagatggtgaaatttatagaaatcatcttcataat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11420176 |
aaaaattttctttcatcacaatttatccttaccccatataaattggtgctaatttgacactcttcaagatggtgaaatttatagaaatcatcttcataat |
11420275 |
T |
|
| Q |
201 |
cataccaaaatgatttttcttcgttgtggttgagatttttctttgcagctttataat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11420276 |
cataccaaaatgatttttcttcgttgtggttgagattttcctttgcagctttataat |
11420332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11390548 - 11390292
Alignment:
| Q |
1 |
attcaatttcgaaagaaatcgatcaataatattgacacaaagataaagtgtttccggggctaggtttagggcatagtgtgcatctattatagaatctatt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390548 |
attcaatttggaaagaaatcgatcaataatattgacacaaagataaagtgtttccggggctaggtttagggcatagtgtgcatctattatagaatctatt |
11390449 |
T |
|
| Q |
101 |
aaaaattttctttcttcacaatttatccttgccccgtataaattggtgctaatttgacactcttcaagatggtgaaatttatagaaatcatcttcataat |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11390448 |
aacaattttctttcgtcacaatttatccttaccccatataaattggtgctaatttgacactcttcaagatggtgaaatttatagaaatcatcttcataat |
11390349 |
T |
|
| Q |
201 |
cataccaaaatgatttttcttcgttgtggttgagatttttctttgcagctttataat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11390348 |
cataccaaaatgatttttcttcgttgtggttgagattttcctttgcagctttataat |
11390292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University