View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6906_low_9 (Length: 250)

Name: NF6906_low_9
Description: NF6906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6906_low_9
NF6906_low_9
[»] chr3 (4 HSPs)
chr3 (174-240)||(20103548-20103614)
chr3 (105-165)||(20108205-20108265)
chr3 (176-237)||(20079234-20079295)
chr3 (180-239)||(19903774-19903833)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 20103614 - 20103548
Alignment:
Q  174 cattcgaaggacagcctgcatttgaagtattctctatatcttcgttaattggactttacttctctgc 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20103614 cattcgaaggacagcctgcattcgaagtattctctatatcttcgttaattggactttacttctctgc 20103548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 20108265 - 20108205
Alignment:
Q  105 aggatttggagagtattaactattaattaatgtggcaatcccttcaaacaatctatctttg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20108265 aggatttggagagtattaactattaattaatgtggcaatcccttcaaacaatctatctttg 20108205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 20079295 - 20079234
Alignment:
Q  176 ttcgaaggacagcctgcatttgaagtattctctatatcttcgttaattggactttacttctc 237  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  20079295 ttcgaaggacagcctgcatttgaagtattctcgatatgttcattaattggactttacttctc 20079234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 19903774 - 19903833
Alignment:
Q  180 aaggacagcctgcatttgaagtattctctatatcttcgttaattggactttacttctctg 239  Q
    ||||||| |||||||||||  ||||||||| || ||| |||| |||||||||||||||||    
T  19903774 aaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctg 19903833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University