View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_high_10 (Length: 203)
Name: NF6907_high_10
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28244795 - 28244960
Alignment:
| Q |
1 |
ctaaacttgcttatatagagaaaccacttgaaaacactttattcattcagaaatcagacgatgcaaggtgaaggcatggagcaaggctatcgtcaaggag |
100 |
Q |
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| T |
28244795 |
ctaaacttacttatatagagagaccccttgcaaacactttcttcattccgaaactggacggtgcatggtgaaggcaaggagcaaggctatcatcaaggat |
28244894 |
T |
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| Q |
101 |
gaggaagataaaggtttctcccaactttctcccttgagagtatgttttgtatttctttcttgtttat |
167 |
Q |
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| T |
28244895 |
gaggaagct-agggtttctcccaattttcttccttcaaagtatgttttgtaattctttcttgtttat |
28244960 |
T |
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Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 16572963 - 16572811
Alignment:
| Q |
32 |
aaacactttattcattcagaaatcagacgatgcaaggtg--aaggcatggagcaaggctatcgtcaaggaggaggaagataaaggtttctcccaactttc |
129 |
Q |
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| T |
16572963 |
aaacactttattcattcataaaccagatggtgcaaggtgtgaaggcaaggagtaggtctatcatcaaggatgaggaagatat-ggtttcatccaattttc |
16572865 |
T |
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| Q |
130 |
tcccttgagagtatgttttgtatttctttcttgtttatgttttatgttgccatg |
183 |
Q |
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| T |
16572864 |
tccctttagagtatgttttgtaattctttcttgtttatgttttctattgccatg |
16572811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 26472678 - 26472589
Alignment:
| Q |
93 |
tcaaggaggaggaagataaaggtttctcccaactttctcccttgagagtatgttttgtatttctttcttgtttatgttttatgttgccatg |
183 |
Q |
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| T |
26472678 |
tcaatgaggaggaagatag-ggtttctcccaactttcttccttgagagtatgttttgtatttatttcttgtttatgatttatgttgccatg |
26472589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 10683499 - 10683541
Alignment:
| Q |
139 |
agtatgttttgtatttctttcttgtttatgttttatgttgcca |
181 |
Q |
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| T |
10683499 |
agtatgttttgtatttctttcttgtttagattttatgttgcca |
10683541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 22114975 - 22114931
Alignment:
| Q |
138 |
gagtatgttttgtatttctttcttgtttatgttttatgttgccat |
182 |
Q |
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| T |
22114975 |
gagtatattttgtattttcttcttgtttatgttttctgttgccat |
22114931 |
T |
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