View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_high_4 (Length: 390)
Name: NF6907_high_4
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 78 - 277
Target Start/End: Complemental strand, 3038595 - 3038402
Alignment:
| Q |
78 |
taagttttacaaaatcaaccacatccaagaagagtatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagtta |
177 |
Q |
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| T |
3038595 |
taagttttacaaaatcaaccacatccaagaagagtatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagtta |
3038496 |
T |
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| Q |
178 |
taactaccaataccataatttgttggggaaggaggagctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
277 |
Q |
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| T |
3038495 |
taact------accataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3038402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 3021815 - 3021533
Alignment:
| Q |
5 |
agtttcgtgttcaatccaacaaactatgtttatgtgcgacttcaatattatttcaaacttaactnnnnnnnn-gtaagttttacaaaatcaaccacatcc |
103 |
Q |
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| T |
3021815 |
agtttcatgttcaatccaacaaactatgtttatgtgcgacttcaatattatttcaaactgaactaaaaaaaaagtaagttttacaaaatcaatcgcatcc |
3021716 |
T |
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| Q |
104 |
aagaagagtat---------------caaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactaccaat |
188 |
Q |
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| T |
3021715 |
aaaaagagtgtagtgtgcttgcgtttcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataact------ |
3021622 |
T |
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| Q |
189 |
accataatttgttggggaaggaggagctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
277 |
Q |
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| T |
3021621 |
accataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3021533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 3021447 - 3021397
Alignment:
| Q |
321 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttat |
371 |
Q |
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| T |
3021447 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttat |
3021397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 3038316 - 3038266
Alignment:
| Q |
321 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttat |
371 |
Q |
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| T |
3038316 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttat |
3038266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 32752584 - 32752507
Alignment:
| Q |
195 |
atttgttggggaaggaggagctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattc |
272 |
Q |
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| T |
32752584 |
atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaatcatgcatgtcttccaattc |
32752507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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