View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_high_6 (Length: 364)
Name: NF6907_high_6
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 44250072 - 44250380
Alignment:
| Q |
22 |
attggctggcatgaggaattaacgtaccgtttcttatagataacatcggagggagtatttatttaggcaaaacgtcttaattaaaaagcttcttttttag |
121 |
Q |
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| T |
44250072 |
attggctggcatgaggaattaacgtaccgtttcttatagataagatcggagggagtatttatttaggcaaaacgtcttaattgaaaagcttcttttttag |
44250171 |
T |
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| Q |
122 |
gaaaagaaaaatatcattactgattctattaccattctttttcaaacataggaatgacaaaaagatagcaattgactagcacgaggaattaacatactct |
221 |
Q |
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| T |
44250172 |
gaaaagaaaaatatcattactgattctattaccattctttttcaaacataggaatgacaaaaagatagcaattgactagcacgaggaattaacatactct |
44250271 |
T |
|
| Q |
222 |
catttaccacattatttggcccttcatgtatcttggaatttggtttcattcatttcctccattgcatattataagtcggtttgaagaaaaaatagtctta |
321 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44250272 |
catttactacattatttggcccttcatgtattttggaatttggtttcattcatttcctccattgcagattataagtcggtttgaagaaaaaatagtctta |
44250371 |
T |
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| Q |
322 |
aattataag |
330 |
Q |
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||||||||| |
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| T |
44250372 |
aattataag |
44250380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 44249964 - 44250094
Alignment:
| Q |
83 |
tttaggcaaaacgtcttaattaaaaagcttcttttttaggaaaagaaaaatatcattactgattctattaccattctttttcaaacataggaatgacaaa |
182 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||| |||||||||| |
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| T |
44249964 |
tttaggcaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatttcatta-tgattatattactgttctttttcaaacatatgaatgacaaa |
44250062 |
T |
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| Q |
183 |
aagatagcaattgactagcacgaggaattaac |
214 |
Q |
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| T |
44250063 |
aagatagcaattggctggcatgaggaattaac |
44250094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 44253555 - 44253692
Alignment:
| Q |
83 |
tttaggcaaaacgtcttaattaaaaagcttcttttttaggaaaagaaaaatatcattactgattctattaccattctttttcaaacataggaatgacaaa |
182 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
44253555 |
tttaggcaaaacgtcttaattgaaaagcttcttttttaggaagaaaaaaata-cattacttattct------attctttttcaaacataggaaagacaag |
44253647 |
T |
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| Q |
183 |
aagatagcaattgactagcacgaggaattaa-catactctcattt |
226 |
Q |
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| T |
44253648 |
aggatagcaattggctggaacgaggaattaaccatactcccattt |
44253692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 330
Target Start/End: Original strand, 50112254 - 50112544
Alignment:
| Q |
30 |
gcatgaggaattaacgtaccgtttcttatagataacatcggagggagtatttatttaggcaaaacgtcttaattaaaaagcttcttttttaggaaaagaa |
129 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50112254 |
gcatgaggaattaacgtactgtttcttatagataagatcggagggagtatttatttaggcaaaacgtcttaattgaaaagcttcttttttaggaaaagaa |
50112353 |
T |
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| Q |
130 |
aaatatcattactgattctattaccattctttttcaaacataggaatgacaaaaagatagcaattgactagcacgaggaattaacatactctcatttacc |
229 |
Q |
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||||||||||| | | |||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
50112354 |
aaatatcattaataa----------attcttcttcaaacataggaatgacaaaaggatagcaattggctggcacgaggaattaacatactctcatttact |
50112443 |
T |
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| Q |
230 |
acattatttggcccttcatgtatcttggaatttggtttcattcatttcctccattgcatattataagtcggtttgaagaaaaaatagtcttaaattataa |
329 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||| |
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| T |
50112444 |
atattatttggcccttcatgtatcttggaatttggtttcattcatttcctccattgtagattataagtcggtttgaagaaaaacttgtcttaaattataa |
50112543 |
T |
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