View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_11 (Length: 260)
Name: NF6907_low_11
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 27508508 - 27508761
Alignment:
| Q |
1 |
tggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508508 |
tggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttc |
27508607 |
T |
|
| Q |
101 |
aataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
27508608 |
aataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatca |
27508707 |
T |
|
| Q |
201 |
attacttagttacatccttcttacttttgatannnnnnnctctgttcttctctc |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27508708 |
attacttagttacatccttcttacttttgatatttttttctctgttcttctctc |
27508761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27503564 - 27503794
Alignment:
| Q |
1 |
tggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccacccctt |
99 |
Q |
| |
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|||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
27503564 |
tggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatgatctctatccttccacccctt |
27503663 |
T |
|
| Q |
100 |
caataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
27503664 |
caataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaattcatt-gcatcatc |
27503762 |
T |
|
| Q |
200 |
aattacttagttacatccttcttacttttgat |
231 |
Q |
| |
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|| |||||| |||||||| |||||| |||||| |
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| T |
27503763 |
aaatacttaattacatccatcttacatttgat |
27503794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27524166 - 27524394
Alignment:
| Q |
1 |
tggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttc |
100 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||| |
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| T |
27524166 |
tggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgatctatatccttcaaccccttc |
27524265 |
T |
|
| Q |
101 |
aataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatca |
200 |
Q |
| |
|
||||||||||||||| | |||| || ||||||| ||||| ||| |||||| ||| ||||| |||||||||||||||||| | |||||||| || | |||| |
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| T |
27524266 |
aataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacagaaaaactcatt-gcattatca |
27524364 |
T |
|
| Q |
201 |
attacttagttacatccttcttacttttga |
230 |
Q |
| |
|
| || ||||||||||||||| ||| ||||| |
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|
| T |
27524365 |
aatatttagttacatccttcatacatttga |
27524394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27476068 - 27475853
Alignment:
| Q |
1 |
tggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccacccctt |
99 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||| || | ||||| |
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| T |
27476068 |
tggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgctctctatccatcaaaccctt |
27475969 |
T |
|
| Q |
100 |
caataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatc |
199 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||| |
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| T |
27475968 |
caataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttcataaacagcacaactgattggcatcatc |
27475869 |
T |
|
| Q |
200 |
aattacttagttacat |
215 |
Q |
| |
|
|| || |||||||||| |
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|
| T |
27475868 |
aaatatttagttacat |
27475853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27468835 - 27468624
Alignment:
| Q |
1 |
tggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccacccctt |
99 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| || | ||||| |
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| T |
27468835 |
tggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaaccctt |
27468736 |
T |
|
| Q |
100 |
caataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatc |
199 |
Q |
| |
|
|||||||||||||| | | |||| | |||||||| ||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||| || ||||| |
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|
| T |
27468735 |
caataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacaggacaactcattggcatcatc |
27468636 |
T |
|
| Q |
200 |
aattacttagtt |
211 |
Q |
| |
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|| || |||||| |
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|
| T |
27468635 |
aaatatttagtt |
27468624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27514526 - 27514736
Alignment:
| Q |
1 |
tggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccacccctt |
99 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| || | ||||| |
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| T |
27514526 |
tggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgctctctatccatcaaaccctt |
27514625 |
T |
|
| Q |
100 |
caataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatc |
199 |
Q |
| |
|
|||||||||||| ||| | |||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||| || ||||||||||||| || ||||| |
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|
| T |
27514626 |
caataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--agcacaactcattggcatcatc |
27514723 |
T |
|
| Q |
200 |
aattacttagtta |
212 |
Q |
| |
|
|| || ||||||| |
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|
| T |
27514724 |
aagtatttagtta |
27514736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27517386 - 27517475
Alignment:
| Q |
1 |
tggaagctttgtattggacattgtgtaagaaggtagggtacactc-taagacaacaccacatgctaccttatcactatgctctctatcctt |
90 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||| |||||||||| ||||| ||||||||||| |||| |
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|
| T |
27517386 |
tggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgctatattatc-ttatgctctctaacctt |
27517475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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