View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6907_low_12 (Length: 246)

Name: NF6907_low_12
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6907_low_12
NF6907_low_12
[»] chr6 (3 HSPs)
chr6 (1-221)||(8344555-8344775)
chr6 (7-98)||(8340437-8340528)
chr6 (17-95)||(8333320-8333398)
[»] scaffold0595 (2 HSPs)
scaffold0595 (7-98)||(2690-2781)
scaffold0595 (161-230)||(2946-3015)
[»] chr8 (1 HSPs)
chr8 (165-223)||(6372461-6372519)
[»] chr4 (2 HSPs)
chr4 (149-211)||(40184149-40184211)
chr4 (165-214)||(18578076-18578125)
[»] chr1 (3 HSPs)
chr1 (184-229)||(26296550-26296595)
chr1 (164-216)||(40515715-40515767)
chr1 (173-213)||(45839564-45839604)
[»] chr7 (1 HSPs)
chr7 (187-239)||(39860777-39860829)
[»] chr5 (1 HSPs)
chr5 (164-216)||(15934042-15934094)
[»] chr3 (1 HSPs)
chr3 (182-230)||(34964190-34964238)
[»] chr2 (1 HSPs)
chr2 (164-216)||(10555783-10555835)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8344555 - 8344775
Alignment:
Q  1 ctacgcgtttggtgtgaatgccaatgacttggtgtacaataatgttacatcattttttaaacgtcaatggtgatacttgaataattagggtgcttaagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8344555 ctacgcgtttggtgtgaatgccaatgacttggtgtacaataatgttacatcattttttaaacgtcaatggtgatacttgaataattagggtgcttaagac 8344654  T
Q  101 gaggttatagcnnnnnnnnnnnnnnnatgttaaccttttagttcttaggggaaagggatcttaataatttggagtttgatcgggaggtaagtaaagtatg 200  Q
    ||||||||||                ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8344655 gaggttatagtcttttttttttttttatgttaatcctttagttcctaggggaaagggatcttaataatttggagtttgatcggaaggtaagtaaagtatg 8344754  T
Q  201 atcaataattgttccaatcag 221  Q
    ||||||||||||| |||||||    
T  8344755 atcaataattgtttcaatcag 8344775  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 8340437 - 8340528
Alignment:
Q  7 gtttggtgtgaatgccaatgacttggtgtacaataatgttacatcattttttaaacgtcaatggtgatacttgaataattagggtgcttaag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  8340437 gtttggtgtgaatgccaatgacttggtgtacaataatgttacatcgttttttaaacgtaaatggtgatacttgaataattagggtgcttaag 8340528  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8333320 - 8333398
Alignment:
Q  17 aatgccaatgacttggtgtacaataatgttacatcattttttaaacgtcaatggtgatacttgaataattagggtgctt 95  Q
    |||||||||||  | |||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  8333320 aatgccaatgagatagtgtacaaaaatgttacctcattttttcaacgtcaatggtgatagttgaataattagggtgctt 8333398  T

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Target: scaffold0595 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 2690 - 2781
Alignment:
Q  7 gtttggtgtgaatgccaatgacttggtgtacaataatgttacatcattttttaaacgtcaatggtgatacttgaataattagggtgcttaag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  2690 gtttggtgtgaatgccaatgacttggtgtacaataatgttacatcgttttttaaacgtaaatggtgatacttgaataattagggtgcttaag 2781  T

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Target: scaffold0595; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 2946 - 3015
Alignment:
Q  161 ttaataatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttccaatcagaaatcgaac 230  Q
    |||||||||||||||| |||| ||||||||||||||| | ||||| ||||||| ||| ||  ||||||||    
T  2946 ttaataatttggagttcgatcaggaggtaagtaaagtttaatcaagaattgtttcaaccaagaatcgaac 3015  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 6372461 - 6372519
Alignment:
Q  165 taatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttccaatcagaa 223  Q
    |||| ||||||||||||| |||||||||| ||| |||| || |||||||||| ||||||    
T  6372461 taatatggagtttgatcgagaggtaagtatagtttgataaaaaattgttccattcagaa 6372519  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 40184149 - 40184211
Alignment:
Q  149 gggaaagggatcttaataatttggagtttgatcgggaggtaagtaaagtatgatcaataattg 211  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||| ||| ||| |||||    
T  40184149 gggaaagggatcttgataatttgaagttcaatcgggaggtgagtaaagtttgaacaagaattg 40184211  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 18578125 - 18578076
Alignment:
Q  165 taatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttc 214  Q
    |||| ||||||||| |||| || |||||||||| ||||||||||||||||    
T  18578125 taatatggagtttggtcggaagataagtaaagtttgatcaataattgttc 18578076  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 26296595 - 26296550
Alignment:
Q  184 gaggtaagtaaagtatgatcaataattgttccaatcagaaatcgaa 229  Q
    |||||||||||||||||| |||| |||||||||| ||||| |||||    
T  26296595 gaggtaagtaaagtatgaccaatgattgttccaaccagaattcgaa 26296550  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 40515767 - 40515715
Alignment:
Q  164 ataatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttcca 216  Q
    |||||||| |||| ||||||||| ||||||||||||||  || ||||||||||    
T  40515767 ataatttgaagttcgatcgggagataagtaaagtatgacaaagaattgttcca 40515715  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 45839564 - 45839604
Alignment:
Q  173 agtttgatcgggaggtaagtaaagtatgatcaataattgtt 213  Q
    ||||||||||||| ||||||||||| ||| |||||||||||    
T  45839564 agtttgatcgggaagtaagtaaagtttgagcaataattgtt 45839604  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 39860777 - 39860829
Alignment:
Q  187 gtaagtaaagtatgatcaataattgttccaatcagaaatcgaacacaggttct 239  Q
    ||||||||||| ||||||||||||||||||  || ||||| ||||| ||||||    
T  39860777 gtaagtaaagtttgatcaataattgttccatccacaaatcaaacacgggttct 39860829  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 15934094 - 15934042
Alignment:
Q  164 ataatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttcca 216  Q
    ||||||||||||  | ||||||||||||||||| ||||| || ||||||||||    
T  15934094 ataatttggagtacggtcgggaggtaagtaaagcatgataaaaaattgttcca 15934042  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 34964238 - 34964190
Alignment:
Q  182 gggaggtaagtaaagtatgatcaataattgttccaatcagaaatcgaac 230  Q
    |||||||||||||||| || |||||||||||||| || || ||||||||    
T  34964238 gggaggtaagtaaagtctggtcaataattgttcccattaggaatcgaac 34964190  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 10555783 - 10555835
Alignment:
Q  164 ataatttggagtttgatcgggaggtaagtaaagtatgatcaataattgttcca 216  Q
    ||||||||||||||| || ||||||||||||||| || ||||  |||||||||    
T  10555783 ataatttggagtttggtcaggaggtaagtaaagtctggtcaaggattgttcca 10555835  T

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