View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_13 (Length: 243)
Name: NF6907_low_13
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_13 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8344528 - 8344302
Alignment:
| Q |
1 |
ttgaacactaagcttgtctgcttcatggttctgaaagtgttgattaagtaatctcttaacatcagcaacatcggaaagcgcgtcgcgaccgccatagctc |
100 |
Q |
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| T |
8344528 |
ttgaacactaagcttgtctgcttcatggttctgaaagtgttgattaagtaatctcttaacatcagcaacatcggaaagcgcgtcgcgaccgccatagctc |
8344429 |
T |
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| Q |
101 |
atgaaaattggtacatttttaggaatgtttgagaggttgtagactggaggtgttggtcgtccataatgcctgaagtttaagtgtggcgacataaagttga |
200 |
Q |
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| T |
8344428 |
atgaaaattggtacatttttaggaatgtttgagaggttgtagactggaggtgttggtcgtccataatgccagaagtttaagtgtggcgacataaagtcga |
8344329 |
T |
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| Q |
201 |
atttcgtcaagacaccactttgaacat |
227 |
Q |
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| T |
8344328 |
atttcgtcaagacaccactttgaacat |
8344302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8340404 - 8340189
Alignment:
| Q |
1 |
ttgaacactaagcttgtctgcttcatggttctgaaagtgttgattaagtaatctcttaacatcagcaacatcggaaagcgcgtcgcgaccgccatagctc |
100 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
8340404 |
ttgaacactaagcttgtttgcatcatggttctgaaagtgttcattaagtaatctcttaacatcagcaacatcggaaagcgcgtcactaccgccatagctc |
8340305 |
T |
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| Q |
101 |
atgaaaattggtacatttttaggaatgtttgagaggttgtagactggaggtgttggtcgtccataatgcctgaagtttaagtgtggcgacataaagttga |
200 |
Q |
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| T |
8340304 |
atgaaaattggaacatttttaggaatgtttgagaggttgtagattggaggtgttagtcgacgataatgccagaagtttaagtgtggcaacataaagtcaa |
8340205 |
T |
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| Q |
201 |
atttcgtcaagacacc |
216 |
Q |
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| T |
8340204 |
atttcgttaagacacc |
8340189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8333277 - 8333109
Alignment:
| Q |
1 |
ttgaacactaagcttgtctgcttcatggttctgaaagtgttgattaagtaatctcttaacatcagcaacatcggaaagcgcgtcgcgaccgccatagctc |
100 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
8333277 |
ttgaacactaagcttgcctgtatcatggttccgaaagtgttcattaagtaatctcttaacatcggcaacatcggaaagcgcgtcgcgacctccatagctt |
8333178 |
T |
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| Q |
101 |
atgaaaattggtacatttttaggaatgtttgagaggttgtagactggaggtgttggtcgtccataatgc |
169 |
Q |
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| T |
8333177 |
atgaaaattggtacatttttaggaatgtttgagagattgtagataggaggtgttagttttccataatgc |
8333109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2657 - 2581
Alignment:
| Q |
1 |
ttgaacactaagcttgtctgcttcatggttctgaaagtgttgattaagtaatctcttaacatcagcaacatcggaaa |
77 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2657 |
ttgaacactaagcttgtttgcatcatggttctgaaagtgttcattaagtaatctcttaacatcagcaacatcggaaa |
2581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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