View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_14 (Length: 228)
Name: NF6907_low_14
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 36238797 - 36238894
Alignment:
| Q |
12 |
gaagaagatgaagccgatgatgacgacccagacgatgtcgatgatgcatgagtagtcttccttgaacctaccaaccttgacaaaatgcatgaaaaaat |
109 |
Q |
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| T |
36238797 |
gaagaagatgaagccgatgatgacgacccagacgatgtcgatgatgcatgagtagtcttccttgaacctaccaaccttaacaaaatgcatgaaaaaat |
36238894 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 36238938 - 36238998
Alignment:
| Q |
153 |
gaataatatgaaggtgggggtgtaagtggaggaatagaggtttcagataaagggtgcttag |
213 |
Q |
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| T |
36238938 |
gaataatatgaaggtgggggtgtaagtggaggaatagaggtttcagataaagggtgcttag |
36238998 |
T |
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