View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_16 (Length: 203)
Name: NF6907_low_16
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 14727994 - 14728184
Alignment:
| Q |
10 |
gacatcagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
109 |
Q |
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| T |
14727994 |
gacataagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacagaaactttacagct |
14728093 |
T |
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| Q |
110 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatgtccatc |
200 |
Q |
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| T |
14728094 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatc |
14728184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 17595491 - 17595301
Alignment:
| Q |
10 |
gacatcagcaagctcctccaaattttttgataataattccgaacagaatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
109 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595491 |
gacatcagcaagcttctccaaattttttgataataactccgaacaggatatgttgatctcccctaagactgtggcattttctaacaaaaactttacagct |
17595392 |
T |
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| Q |
110 |
tcgatatcaggtttaattccaagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatgtccatc |
200 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17595391 |
tcgatatcaggttcaattccaagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatc |
17595301 |
T |
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