View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6907_low_18 (Length: 202)
Name: NF6907_low_18
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 47282351 - 47282182
Alignment:
| Q |
17 |
tgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282351 |
tgtggcgaggcctgcaaaacattaaggatgaagaattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacat |
47282252 |
T |
|
| Q |
117 |
catatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282251 |
catatatgagttcttggaagcaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatc |
47282182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 47275604 - 47275441
Alignment:
| Q |
24 |
aggcctgcaaaacattaaggatgaa-gaattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatata |
122 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||| ||||||||||| ||||| || |||| ||||||||| |||| |
|
|
| T |
47275604 |
aggcctgcaaaacattaaggttgaaagaattaacataattggacctgtataagcagaatgggatgatcaataatttggtttgtgcctggaacatcgtata |
47275505 |
T |
|
| Q |
123 |
tgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||| ||||| |
|
|
| T |
47275504 |
tgagttcttggaagcaagggaatgggggatgcagtgcatcaccaaattcatcaagtgtaacatc |
47275441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 47240954 - 47240877
Alignment:
| Q |
109 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
||||||||| |||| ||||| |||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
47240954 |
tggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatc |
47240877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 47296239 - 47296316
Alignment:
| Q |
109 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||| ||||| || ||||||||||||| || |||||||||||| |
|
|
| T |
47296239 |
tggaacatcatataggagttgttggaagcaagggaatggaggatgcagggcatcaccaaattgatcaagtgttacatc |
47296316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 47300772 - 47300908
Alignment:
| Q |
50 |
aattaacatgattggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggg |
149 |
Q |
| |
|
|||||| || |||| ||||||||||| |||| ||| | || || ||||||| || || | |||||||||||| ||||| ||||| ||||||||||| | |
|
|
| T |
47300772 |
aattaatataattgaacctgtatgagtcgaatgggacggtccataatttgttccgagcctcgaacatcatataggagttgatggaagcaagggaatggag |
47300871 |
T |
|
| Q |
150 |
gatgaagagcatcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
|||| || ||||||||||||| || |||||||||||| |
|
|
| T |
47300872 |
gatgcagggcatcaccaaattgatcaagtgttacatc |
47300908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 47255906 - 47255833
Alignment:
| Q |
109 |
tggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagcatcaccaaattcattaagtgtta |
182 |
Q |
| |
|
|||||||||| ||| | ||||||||| ||||| ||||| || || |||||||||||||||| || |||||||| |
|
|
| T |
47255906 |
tggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagtgtta |
47255833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 32729668 - 32729542
Alignment:
| Q |
60 |
attggacctgtatgagcagaataggatgatcaatgatttgtttcgtgcttggaacatcatatatgagttcttggaaacaagggaatgggggatgaagagc |
159 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||| || |||| | || ||||||||| |||| ||||| |||||| ||||||||||| ||||| ||||| |
|
|
| T |
32729668 |
attggacctgtatgagtcgaatgggacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagc |
32729569 |
T |
|
| Q |
160 |
atcaccaaattcattaagtgttacatc |
186 |
Q |
| |
|
||||||||||| || |||||||||||| |
|
|
| T |
32729568 |
atcaccaaattgatcaagtgttacatc |
32729542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University