View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_2 (Length: 531)
Name: NF6907_low_2
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Complemental strand, 3885042 - 3884537
Alignment:
| Q |
16 |
aaaaattacgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttt |
115 |
Q |
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| T |
3885042 |
aaaaattgcgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttt |
3884943 |
T |
|
| Q |
116 |
tgtgttgcaatttcatcatatcatataaacatatatacattttaattagcaacacnnnnnnntttccccgaacataattttttatcatctaaatcaatct |
215 |
Q |
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| T |
3884942 |
tgtgttgcaatttcatcatatcatataaacatatatacattttaattagcaacacaaaaaa-tttccccgaacataattttttatcatctaaatcaatct |
3884844 |
T |
|
| Q |
216 |
tttgaatggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctagctgtggcttctcctct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884843 |
tttgaatggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagtagcagccataagcttggtagttctagctgtggcttctcctct |
3884744 |
T |
|
| Q |
316 |
atacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtc |
415 |
Q |
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| T |
3884743 |
atacatagatcacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtc |
3884644 |
T |
|
| Q |
416 |
atatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattctta |
515 |
Q |
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| T |
3884643 |
atatctttatcagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggt-gttcttctggtggtattgttttcattctta |
3884545 |
T |
|
| Q |
516 |
ttcttctc |
523 |
Q |
| |
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|||||||| |
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| T |
3884544 |
ttcttctc |
3884537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 200 - 523
Target Start/End: Complemental strand, 3874331 - 3874008
Alignment:
| Q |
200 |
tcatctaaatcaatcttttgaatggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctag |
299 |
Q |
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||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||| || | |||||||| ||||||||||||||| |||||||||| |
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| T |
3874331 |
tcatctaaatcaatcttctgaatggaacctgaagctagtaggaggggtcacaaattttcatcttatgagagagtagcagccataagcttagtagttctag |
3874232 |
T |
|
| Q |
300 |
ctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3874231 |
ctgtggcttctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttt |
3874132 |
T |
|
| Q |
400 |
tgtattggttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggt |
499 |
Q |
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| T |
3874131 |
tgtattggttttagtcatatctttatcagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggt |
3874032 |
T |
|
| Q |
500 |
attgttttcattcttattcttctc |
523 |
Q |
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|||||||||||||||||||||||| |
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| T |
3874031 |
attgttttcattcttattcttctc |
3874008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 3874462 - 3874337
Alignment:
| Q |
49 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatatcatat-aa |
143 |
Q |
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|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
3874462 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaacatttttgtgttgcaattccatcatatcatatcat |
3874364 |
T |
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| Q |
144 |
acatatatacattttaattagcaacac |
170 |
Q |
| |
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| ||| |||||||||||||| |||||| |
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| T |
3874363 |
atatacatacattttaattaacaacac |
3874337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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