View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6907_low_3 (Length: 522)
Name: NF6907_low_3
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6907_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 249 - 506
Target Start/End: Original strand, 1052870 - 1053127
Alignment:
| Q |
249 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052870 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
1052969 |
T |
|
| Q |
349 |
cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcatttttcttaaatt |
448 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052970 |
cgaggaggctaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcatttttcttaaatt |
1053069 |
T |
|
| Q |
449 |
tctccatagttcaattgattcaatttaaaagtatgaacagaaataatgacgtaaatta |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053070 |
tctccatagttcaattgattcaatttaaaagtatgaacagaaataatgacgtaaatta |
1053127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 1052203 - 1052350
Alignment:
| Q |
1 |
gtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaata-acatatttttctaatttttcaagtatta |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1052203 |
gtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatctaatgagcaattaattgacatatttttctaatttttcaagtatta |
1052302 |
T |
|
| Q |
100 |
cttttaggtgggaatgaaatttttgttagagatgatacttattttata |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1052303 |
cttttaggtgggaatgaaatttttgttagagatgatacttattttata |
1052350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 249 - 435
Target Start/End: Original strand, 1046210 - 1046396
Alignment:
| Q |
249 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
348 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| || |||| |||||||||||| || |
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| T |
1046210 |
gtttatcaaccaaatggacaagcaccaatatcttctacagacaaactactcacaccacgaattggaggcaatggtattgaaatatcacaattcacaccac |
1046309 |
T |
|
| Q |
349 |
cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattca |
435 |
Q |
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| T |
1046310 |
caaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaacttca |
1046396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 249 - 430
Target Start/End: Original strand, 1065270 - 1065451
Alignment:
| Q |
249 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
348 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||| || |||||||| |||||||||||||||| || || |||||||| | || || ||||||||| | |
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| T |
1065270 |
gtttttcagccaaatggacaggcaccaatatcatctacagacaagtcactcacaccacaaattcgaagtaatggttttaatattgcaaaattcacaccgc |
1065369 |
T |
|
| Q |
349 |
cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
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| || || |||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1065370 |
ctagacggctaaggacagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
1065451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 249 - 430
Target Start/End: Original strand, 1071009 - 1071190
Alignment:
| Q |
249 |
gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac |
348 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||| | ||| | |||||||||| || || ||||| || | | || ||||||||| || |
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| T |
1071009 |
gtttatcagccaaatgggcaagcaccaatatcttctacagacaagccactaaaaccacaaattcgaagtaatggtattgatgttgcaaaattcacaccac |
1071108 |
T |
|
| Q |
349 |
cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
|
| ||| || |||| ||||| |||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
1071109 |
caaggcggctaaggacagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagctggtaa |
1071190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 1033360 - 1033453
Alignment:
| Q |
337 |
aattcacacaaccgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
|
||||| ||| |||||| ||| |||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
1033360 |
aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaa |
1033453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 1043750 - 1043845
Alignment:
| Q |
335 |
acaattcacacaaccgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
|
||||||||| ||||||| || |||| ||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
1043750 |
acaattcacgaaaccgagacggctaagcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa |
1043845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 1058218 - 1058387
Alignment:
| Q |
261 |
aatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaaccgaggaggttaa |
360 |
Q |
| |
|
||||| || |||||||||||| | |||||||| | ||||||||||||| || || || ||||| || | | || ||||||||| || || || ||| |
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| T |
1058218 |
aatggacaggcaccaatatctcctacagacaagccactcacaccacaacttcgaagtaatggtattgatgtcgcagaattcacaccgcccagacggctaa |
1058317 |
T |
|
| Q |
361 |
gaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
|
| | ||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1058318 |
ggatagatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
1058387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1032880 - 1032926
Alignment:
| Q |
1 |
gtcagatttggcatgttggaagagtttctaattctagtatgtattta |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1032880 |
gtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1032926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 1045975 - 1046130
Alignment:
| Q |
6 |
atttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaa-taacatatttttctaatttttcaagtattactttt |
104 |
Q |
| |
|
||||||| |||||| || |||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||| |||||| | ||||||| |||||| |||| |
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| T |
1045975 |
atttggcttgttggtagggtttctaattctggtatgcatttagtttaatcaaattagcaattaactaacaaattttt-tgatttttc-agtatt-ttttt |
1046071 |
T |
|
| Q |
105 |
aggtgggaatgaaatttttgttagag-atgatacttattttatattcactagtttaatta |
163 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||| || ||||| |||||||||||||||| |
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|
| T |
1046072 |
aggtaggaattgaatttttgttacagaatgata-ttgatttatgttcactagtttaatta |
1046130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 1641141 - 1641080
Alignment:
| Q |
369 |
gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
430 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||||| |||||||| | ||||||||| |
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|
| T |
1641141 |
gaaattcctcgtatcgtcaatgacttcagacttgctgcaaggaatgctatagcagctggtaa |
1641080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1043288 - 1043321
Alignment:
| Q |
1 |
gtcagatttggcatgttggaagagtttctaattc |
34 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
1043288 |
gtcagatttggcatgttggaagagtttcaaattc |
1043321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1065047 - 1065080
Alignment:
| Q |
1 |
gtcagatttggcatgttggaagagtttctaattc |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
1065047 |
gtcagatttggcatgttggaagagtttctgattc |
1065080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 1050993 - 1051077
Alignment:
| Q |
260 |
aaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcaca |
344 |
Q |
| |
|
|||||| |||| ||||| |||||| || ||| ||||| |||||||||||||||||||||| | || |||| ||||||||||| |
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|
| T |
1050993 |
aaatggacaagaaccaacatcttctgcaagcaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca |
1051077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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