View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6907_low_4 (Length: 475)

Name: NF6907_low_4
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6907_low_4
NF6907_low_4
[»] chr8 (11 HSPs)
chr8 (68-468)||(20171778-20172180)
chr8 (112-319)||(11428184-11428391)
chr8 (178-428)||(8150449-8150698)
chr8 (112-428)||(10186224-10186538)
chr8 (178-408)||(4138252-4138488)
chr8 (344-468)||(11428060-11428184)
chr8 (322-392)||(918949-919019)
chr8 (118-188)||(9083125-9083194)
chr8 (117-188)||(32663981-32664051)
chr8 (100-161)||(31686143-31686202)
chr8 (112-161)||(12274210-12274259)
[»] chr7 (11 HSPs)
chr7 (68-468)||(44393488-44393890)
chr7 (178-453)||(47233751-47234029)
chr7 (243-454)||(5767992-5768206)
chr7 (243-454)||(25419503-25419717)
chr7 (243-428)||(39066825-39067012)
chr7 (372-426)||(47932920-47932974)
chr7 (114-155)||(39063960-39064001)
chr7 (112-161)||(39073323-39073372)
chr7 (97-155)||(14755767-14755823)
chr7 (112-161)||(5768330-5768379)
chr7 (112-161)||(25419827-25419876)
[»] chr4 (15 HSPs)
chr4 (126-454)||(5430592-5430923)
chr4 (96-454)||(34737730-34738085)
chr4 (178-454)||(53830433-53830716)
chr4 (97-454)||(21802753-21803106)
chr4 (97-454)||(21632700-21633061)
chr4 (243-454)||(2504929-2505143)
chr4 (191-453)||(2500576-2500838)
chr4 (253-454)||(46092312-46092517)
chr4 (253-454)||(46134837-46135042)
chr4 (211-428)||(20036251-20036467)
chr4 (389-426)||(43943567-43943604)
chr4 (97-161)||(2505253-2505317)
chr4 (103-161)||(43942118-43942174)
chr4 (97-153)||(5874249-5874303)
chr4 (116-156)||(51868294-51868334)
[»] chr3 (13 HSPs)
chr3 (114-379)||(26215155-26215420)
chr3 (189-454)||(48266211-48266478)
chr3 (178-454)||(35870278-35870557)
chr3 (243-454)||(52349726-52349940)
chr3 (362-468)||(26215432-26215538)
chr3 (97-155)||(346592-346648)
chr3 (372-426)||(54945722-54945776)
chr3 (97-144)||(10179403-10179448)
chr3 (114-161)||(3744474-3744521)
chr3 (112-155)||(33519233-33519276)
chr3 (372-426)||(5884368-5884422)
chr3 (112-161)||(52349555-52349604)
chr3 (97-144)||(34209855-34209900)
[»] scaffold0516 (2 HSPs)
scaffold0516 (123-427)||(3127-3430)
scaffold0516 (115-216)||(1404-1504)
[»] chr5 (6 HSPs)
chr5 (106-444)||(37301929-37302266)
chr5 (178-454)||(21604997-21605274)
chr5 (243-454)||(36991043-36991257)
chr5 (112-161)||(10180436-10180485)
chr5 (112-153)||(11381255-11381296)
chr5 (120-213)||(11386776-11386869)
[»] chr2 (12 HSPs)
chr2 (178-460)||(41646629-41646912)
chr2 (243-454)||(7574019-7574233)
chr2 (243-454)||(16668614-16668828)
chr2 (322-387)||(43564237-43564302)
chr2 (322-380)||(29455447-29455505)
chr2 (118-188)||(6414329-6414398)
chr2 (112-161)||(22990032-22990081)
chr2 (106-161)||(37904098-37904153)
chr2 (112-161)||(7574355-7574404)
chr2 (112-161)||(16668938-16668987)
chr2 (114-167)||(29455077-29455130)
chr2 (114-167)||(31618575-31618628)
[»] chr1 (8 HSPs)
chr1 (178-454)||(22912459-22912735)
chr1 (243-454)||(13786229-13786443)
chr1 (243-454)||(25807699-25807914)
chr1 (131-427)||(23725986-23726278)
chr1 (97-161)||(29679029-29679095)
chr1 (114-161)||(39621645-39621692)
chr1 (112-161)||(13786058-13786107)
chr1 (97-144)||(42332478-42332523)
[»] chr6 (6 HSPs)
chr6 (243-454)||(13433381-13433595)
chr6 (340-454)||(16712042-16712155)
chr6 (106-156)||(18877355-18877405)
chr6 (112-161)||(8643585-8643634)
chr6 (112-161)||(13433717-13433766)
chr6 (97-153)||(18882289-18882343)
[»] scaffold0713 (1 HSPs)
scaffold0713 (106-161)||(7356-7411)
[»] scaffold0182 (1 HSPs)
scaffold0182 (372-426)||(10116-10170)
[»] scaffold0045 (1 HSPs)
scaffold0045 (112-153)||(1381-1422)
[»] scaffold0316 (1 HSPs)
scaffold0316 (112-156)||(5503-5547)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 68 - 468
Target Start/End: Original strand, 20171778 - 20172180
Alignment:
Q  68 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  20171778 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 20171877  T
Q  164 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 263  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  20171878 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 20171977  T
Q  264 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 363  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20171978 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 20172077  T
Q  364 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgatgtccatc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||| ||    
T  20172078 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgcttatgttatccttc 20172175  T
Q  464 tcatt 468  Q
    |||||    
T  20172176 tcatt 20172180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 112 - 319
Target Start/End: Complemental strand, 11428391 - 11428184
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 211  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||| | |||||||||    
T  11428391 tctatatatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctct 11428292  T
Q  212 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  11428291 cttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttac 11428192  T
Q  312 acaatgaa 319  Q
    ||||||||    
T  11428191 acaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 178 - 428
Target Start/End: Complemental strand, 8150698 - 8150449
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 277  Q
    |||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||    
T  8150698 taactaatctctcatacttatgccatgtgactcacttttgttcttgattctttactagccatttcttactatcta-tctttcatttcccatcagttgcaa 8150600  T
Q  278 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 377  Q
    |||| ||||||| ||||||||| |||  |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8150599 aaacactccatttacttcactttatgcgagttacacaatgaatgcattataatcaattttattaatattgaggggttacattttaaaattattcatattc 8150500  T
Q  378 ttagtcaatcatcttacacacacaagtttactataaagctcctcatttttt 428  Q
    ||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  8150499 ttaatcagtcctcttacacacacaagtttactataaagctcctcatttttt 8150449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 112 - 428
Target Start/End: Original strand, 10186224 - 10186538
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctct 211  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | || |||||||| || ||| ||||    
T  10186224 tctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactct 10186322  T
Q  212 cttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttac 311  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||| ||||||  | |||| || ||||||| || |||||||    
T  10186323 cttttgttcttgattctttactagtcattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttac 10186421  T
Q  312 acaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactat 411  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  10186422 acaatgaatgcattataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagtttactat 10186521  T
Q  412 aaagctcctcatttttt 428  Q
    |||||||||||||||||    
T  10186522 aaagctcctcatttttt 10186538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 4138252 - 4138488
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta------atctttcatttcccatcaa 271  Q
    |||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||||||||      ||||||||||||| |||      
T  4138252 taactaatctctcatacttatgccaagtggctctcttttgttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccg 4138351  T
Q  272 ttggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattc 371  Q
    ||| ||||||  | |||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||    
T  4138352 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttc 4138451  T
Q  372 atattcttagtcaatcatcttacacacacaagtttac 408  Q
    ||||||||| ||||   ||||||||||||||||||||    
T  4138452 atattcttaatcaagactcttacacacacaagtttac 4138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 344 - 468
Target Start/End: Complemental strand, 11428184 - 11428060
Alignment:
Q  344 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatata 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11428184 agtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagtttacgataaagctcctcattttttctaagctcatatata 11428085  T
Q  444 tgttgcttatgatgtccatctcatt 468  Q
    ||||||||||| | ||| |||||||    
T  11428084 tgttgcttatgttatccttctcatt 11428060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 919019 - 918949
Alignment:
Q  322 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatctt 392  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  919019 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 9083194 - 9083125
Alignment:
Q  118 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 188  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 9083125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 32663981 - 32664051
Alignment:
Q  117 atatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 188  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| ||| |||||  ||| |||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaat-ttttccctttctaactaatttt 32664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 31686143 - 31686202
Alignment:
Q  100 tctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    ||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||| ||||    
T  31686143 tctatctctatctctgtata--catgtattctaaactacatattgcttatgtgtcacctcac 31686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 12274210 - 12274259
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  12274210 tctatatatacatgtatgctaagttacattttgtttatgtgtcacctcac 12274259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 68 - 468
Target Start/End: Original strand, 44393488 - 44393890
Alignment:
Q  68 aatgaaatgaaacattggttttggatgacatctctatctctatctctat----atatacatgtattctaaactacattttgtttatgtgtcacttcacta 163  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  44393488 aatgaaatgaaacattggttttggatgacatctccatctctatctctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcacta 44393587  T
Q  164 atattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcattt 263  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  44393588 atattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttcttgattctttactagtcatttcttactatctaatctttcattt 44393687  T
Q  264 cccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaa 363  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44393688 cccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaa 44393787  T
Q  364 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgatgtccatc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||| ||    
T  44393788 aattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca--ttttctaagctcatatatatgttgcttatgttatccttc 44393885  T
Q  464 tcatt 468  Q
    |||||    
T  44393886 tcatt 44393890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 178 - 453
Target Start/End: Complemental strand, 47234029 - 47233751
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 277  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| ||    
T  47234029 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaa 47233931  T
Q  278 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 377  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  47233930 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattaaggggttacattttaaaattattcatattc 47233831  T
Q  378 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttat 453  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  47233830 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttatatatatgttgcttat 47233751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 5768206 - 5767992
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  5768107 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 5768008  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  5768007 atatatgttgcttatg 5767992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 25419717 - 25419503
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  25419618 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 25419519  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  25419518 atatatgttgcttatg 25419503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 428
Target Start/End: Complemental strand, 39067012 - 39066825
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctcatttttt 428  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||   ||||||||| ||||||||||||||    
T  39066913 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacatacaagtttattactataaggctcctcatttttt 39066825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 47932974 - 47932920
Alignment:
Q  372 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 426  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  47932974 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 47932920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 39064001 - 39063960
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtca 155  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtca 39063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 39073372 - 39073323
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  39073372 tctatatatacatgtattctaacctacactttgcttatgtgtcacctcac 39073323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 14755767 - 14755823
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 155  Q
    |||||||||||||||||||||  |||||||||||||| ||||| |||| | ||||||||    
T  14755767 atctctatctctatctctata--tacatgtattctaagctacactttgctgatgtgtca 14755823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 5768379 - 5768330
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  5768379 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 5768330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 25419876 - 25419827
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  25419876 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 25419827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 126 - 454
Target Start/End: Original strand, 5430592 - 5430923
Alignment:
Q  126 tattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgat 225  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  226 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtatt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  326 ataatccattttat---taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 422  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaaactcctca 5430891  T
Q  423 ttttttctaagctcatatatatgttgcttatg 454  Q
    ||||||||||||||||||||||||||||||||    
T  5430892 ttttttctaagctcatatatatgttgcttatg 5430923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 454
Target Start/End: Complemental strand, 34738085 - 34737730
Alignment:
Q  96 catctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatact 195  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||  |||||||||| | || |||   | | |||  |||||||| | |||||||    
T  34738085 catctctatctctatctctatata--catgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatact 34737989  T
Q  196 tatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttc 295  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||| |||||| ||||||  |||||    
T  34737988 tatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttc 34737890  T
Q  296 acttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttaca 395  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  34737889 acttcatgcaagttacacaatgaatgcattataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctcttaca 34737790  T
Q  396 cacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgcttatg 454  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34737789 cacacaagtttactataaagctcctcatttttttctaagcttatatatatgttgcttatg 34737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 178 - 454
Target Start/End: Complemental strand, 53830716 - 53830433
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatcta---atctttcatttcccatcaattg 274  Q
    |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||   ||||||||||| |||||  |||    
T  53830716 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccgttccttactatctatctatctttcattttccatcggttg 53830617  T
Q  275 gaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcata 374  Q
     |||||| ||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53830616 caaaaacactctatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 53830517  T
Q  375 ttcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatg 454  Q
    |||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  53830516 ttcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 53830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 97 - 454
Target Start/End: Original strand, 21802753 - 21803106
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatactt 196  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |  |||||||||| | || |||     | |||  |||||||| | ||||||||    
T  21802753 atctctatctctatctctatata--catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatactt 21802849  T
Q  197 atgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttca 296  Q
    ||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| ||||||  | |||| ||||||    
T  21802850 atgccaagtggctctcttttgttcttgattctttactagccattcattactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttca 21802948  T
Q  297 cttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacac 396  Q
    |||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| |||||||||    
T  21802949 cttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaataatcttacac 21803048  T
Q  397 acacaagtttactataaagctcctca-ttttttctaagctcatatatatgttgcttatg 454  Q
    |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||    
T  21803049 acacaagtttactataaagctcctcatttttttctaagcttat-tatgtgttgcttatg 21803106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 97 - 454
Target Start/End: Complemental strand, 21633061 - 21632700
Alignment:
Q  97 atctctatctctatctctatat----atacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcat 192  Q
    ||||||||||||||||||||||    ||||||||||||||| ||||||||||  |||||||||| | || ||||    | |||  |||||||| | ||||    
T  21633061 atctctatctctatctctatattattatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcat 21632963  T
Q  193 acttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattca 291  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||| ||||| |  | |||| |    
T  21632962 acttatgccaagtggcgctcttttgttcttgattctttactagccattccttactatcta-tctttcattttctatcagttgcaaaaaacatttcattta 21632864  T
Q  292 cttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatct 391  Q
    ||||||||| || ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||  |||||||||| |||||||||||| |||||| |||    
T  21632863 cttcacttcttgcaagttacacgatgaatgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttct 21632764  T
Q  392 tacacacacaagtttactataaagctcctcatt--ttttctaagctcatatatatgttgcttatg 454  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| || ||| |||||||||||    
T  21632763 tacacacacaagtttactataaagctcctcattttttttctaagcttat-tatgtgttgcttatg 21632700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 2505143 - 2504929
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  2505044 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 2504945  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  2504944 atatatgttgcttatg 2504929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 191 - 453
Target Start/End: Complemental strand, 2500838 - 2500576
Alignment:
Q  191 atacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattc 290  Q
    ||||||||| |||||||||||||||||||||||||||  |||||  ||||||||||||| || ||||||||||||||||  ||| |||||  | |||||     
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  291 acttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatc 390  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||  |||||||  |||||| ||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctc 2500640  T
Q  391 ttacacacacaagtttactataaagctcctca-ttttttctaagctcatatatatgttgcttat 453  Q
    |||||||||||||||||||||||| || |||| ||||||||||||| | |||||||||||||||    
T  2500639 ttacacacacaagtttactataaatctactcatttttttctaagcttacatatatgttgcttat 2500576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 253 - 454
Target Start/End: Original strand, 46092312 - 46092517
Alignment:
Q  253 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 352  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46092312 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46092411  T
Q  353 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 448  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46092412 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46092511  T
Q  449 cttatg 454  Q
    ||||||    
T  46092512 cttatg 46092517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 253 - 454
Target Start/End: Original strand, 46134837 - 46135042
Alignment:
Q  253 atctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgagggg 352  Q
    ||||||||||| |||||  ||  |||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46134837 atctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 46134936  T
Q  353 ttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttg 448  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||    
T  46134937 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttg 46135036  T
Q  449 cttatg 454  Q
    ||||||    
T  46135037 cttatg 46135042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 211 - 428
Target Start/End: Original strand, 20036251 - 20036467
Alignment:
Q  211 tcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaa-ctctccattcacttcacttcatggaagtt 309  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||  || ||||| | || || | ||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  310 acacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttact 409  Q
     || |||||||| |||||||| ||||||||||||| ||||  ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagtttact 20036448  T
Q  410 ataaagctcctcatttttt 428  Q
    |||||| ||||||||||||    
T  20036449 ataaagttcctcatttttt 20036467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 43943567 - 43943604
Alignment:
Q  389 tcttacacacacaagtttactataaagctcctcatttt 426  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43943567 tcttacacacacaagtttactacaaagctcctcatttt 43943604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 2505317 - 2505253
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||| ||||| ||||| |||||||||||||||||||| |||||||||   |||||||||| ||||    
T  2505317 atctatatctatatctatatatatacatgtattctaacctacatttttcctatgtgtcacctcac 2505253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 43942118 - 43942174
Alignment:
Q  103 atctctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||  |||||||||||||| |||||||||| |||  |||||||||||    
T  43942118 atctctatctctata--tacatgtattctaatctacattttgcttacatgtcacttcac 43942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 5874249 - 5874303
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 153  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| | ||||||    
T  5874249 atctctatctctatctc--tatatacatgtattctaagctacactttgctcatgtgt 5874303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 51868294 - 51868334
Alignment:
Q  116 tatatacatgtattctaaactacattttgtttatgtgtcac 156  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcac 51868334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 114 - 379
Target Start/End: Original strand, 26215155 - 26215420
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 213  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||| ||| ||| | ||||||||||||| | ||||||||||| |||||||||||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 26215254  T
Q  214 tttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacac 313  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26215255 tttgttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacac 26215354  T
Q  314 aatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattctt 379  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26215355 aatgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 189 - 454
Target Start/End: Original strand, 48266211 - 48266478
Alignment:
Q  189 tcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccat 288  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||    
T  48266211 tcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaactctccat 48266309  T
Q  289 tcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatca 388  Q
    | |||| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  48266310 ttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 48266408  T
Q  389 tcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatg 454  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  48266409 tcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 48266478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 178 - 454
Target Start/End: Original strand, 35870278 - 35870557
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 277  Q
    |||||||| | ||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||  |    
T  35870278 taactaatctctcatacttatgccatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcga 35870376  T
Q  278 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 377  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35870377 aaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagaggttacattttaaaattattcatattc 35870476  T
Q  378 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatg 454  Q
    ||| |||||| ||||||||||||||||   ||||||||||| |||||| |||||||||| || ||||||||||||||||||    
T  35870477 ttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttatatatatgttgcttatg 35870557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 243 - 454
Target Start/End: Original strand, 52349726 - 52349940
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  52349825 tattgaggggttacattttaaaattatttatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 52349924  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  52349925 atatatgttgcttatg 52349940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 26215432 - 26215538
Alignment:
Q  362 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgatgtcca 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||     
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttttctaagctcatatatatgttgcttatgttatcct 26215531  T
Q  462 tctcatt 468  Q
    |||||||    
T  26215532 tctcatt 26215538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 346592 - 346648
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgtca 155  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  346592 atctctatctctatctctata--tacatgtattctaaactacattttgcttatgtgtca 346648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 54945776 - 54945722
Alignment:
Q  372 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 426  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  54945776 atatttttattctatcctcttacacacacaagtttactacaaagctcctcatttt 54945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 10179448 - 10179403
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttg 144  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||    
T  10179448 atctctatctctatctctatata--catgtattctaaactacactttg 10179403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 3744521 - 3744474
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcac 3744474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 33519276 - 33519233
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtca 155  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  33519276 tctatatatacatgtattctaacctacatattgcttatgtgtca 33519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 5884422 - 5884368
Alignment:
Q  372 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 426  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  5884422 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 5884368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 52349555 - 52349604
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  52349555 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 52349604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 34209855 - 34209900
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttg 144  Q
    |||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  34209855 atctctatctctatctc--tatatacatgtattctaaattacactttg 34209900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 123 - 427
Target Start/End: Original strand, 3127 - 3430
Alignment:
Q  123 atgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttctt 222  Q
    ||||||| |||||||||||||  |||||||||||||||| ||  | | | ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  223 gattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgt 322  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||| ||| |||||| || |||| ||||||||||||| ||||| |||||||| ||     
T  3227 gattctttactagccattctttactattta-tctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  323 attataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 422  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  3326 attataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttactataaagctcctca 3425  T
Q  423 ttttt 427  Q
    |||||    
T  3426 ttttt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 1404 - 1504
Alignment:
Q  115 atatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctctt 214  Q
    |||||||||||||||||||  | ||||||| | || |||||| |||| ||  || ||||||| |||| ||| ||||||||||||| ||  ||||||||||    
T  1404 atatatacatgtattctaaggtgcattttgatgatttgtcacctcaccaaagttctcttttt-taaccaatctttcatacttatgccaaatggctctctt 1502  T
Q  215 tt 216  Q
    ||    
T  1503 tt 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 106 - 444
Target Start/End: Complemental strand, 37302266 - 37301929
Alignment:
Q  106 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgt 205  Q
    ||||||| |||||||||||||||||||| ||||||||||  |||||||||| | || |||   ||| |||  |||||||| | | ||||||||| |||||    
T  37302266 tctatctatatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgt 37302168  T
Q  206 ggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatgga 305  Q
    || |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||| |    
T  37302167 ggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgca 37302069  T
Q  306 agttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtt 405  Q
    |||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  37302068 agttacacaatgaatgcattataatccattttattaataatggagggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtt 37301969  T
Q  406 tactataaagctcctcatt-ttttctaagctcatatatat 444  Q
    ||||||||| ||||||||| ||||||||||| ||||||||    
T  37301968 tactataaaactcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 178 - 454
Target Start/End: Complemental strand, 21605274 - 21604997
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 277  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||    || ||    
T  21605274 taactaatctctcatacttatgtcatgtggctatcttttgttcttgattctttattagtcattccttactatcta-tctttcattttccattggctgcaa 21605176  T
Q  278 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 377  Q
    |||| || |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21605175 aaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttaaattttaaaattattcatattc 21605076  T
Q  378 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatg 454  Q
    ||| |||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  21605075 ttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--tatatatgttgcttatg 21604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Original strand, 36991043 - 36991257
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||||||||||| ||||||||||||| ||    
T  36991142 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttat 36991241  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  36991242 atatatgttgcttatg 36991257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 10180436 - 10180485
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  10180436 tctatatatacatgtattctaacctacattttgcttatgtgtcacctcac 10180485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 11381255 - 11381296
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgt 153  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  11381255 tctatatatacatgtattctaacctacattttgcctatgtgt 11381296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 11386776 - 11386869
Alignment:
Q  120 tacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctct 213  Q
    |||||||||||||| |||||||||  |||  |||||| |||| || | | ||  |||||||| ||| | ||||||||||| |||||||||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 178 - 460
Target Start/End: Complemental strand, 41646912 - 41646629
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 277  Q
    |||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||| |||||  ||| ||    
T  41646912 taactaatctctcatacttatgccatgtggctatcttttgttcttgattctttactagccattccttactt----atctttcattttccatcggttgcaa 41646817  T
Q  278 aaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatattc 377  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41646816 aaacactccatttacttcatttcatgcaagttacacaatgaatgtattttaatccattttattaatattgaggggttacattttaaaattattcatattc 41646717  T
Q  378 ttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctcatatatatgttgcttatgatgtcc 460  Q
    ||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |||||||||||||||||| |||||    
T  41646716 ttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgttgcttatgttgtcc 41646629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 7574233 - 7574019
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  7574134 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 7574035  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  7574034 atatatgttgcttatg 7574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 16668828 - 16668614
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  16668729 tattgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 16668630  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  16668629 atatatgttgcttatg 16668614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 43564237 - 43564302
Alignment:
Q  322 tattataatccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatc 387  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  43564237 tattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatc 43564302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 29455447 - 29455505
Alignment:
Q  322 tattataatccattttattaatagtgaggggttacattttaaaattattcatattctta 380  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29455447 tattataatccattttattaatatcgaggggttacattttaaaattattcatattctta 29455505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 6414398 - 6414329
Alignment:
Q  118 tatacatgtattctaaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttt 188  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||| |||| | ||| |||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacctcactaat-ttttttctttttaactaatttt 6414329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 22990081 - 22990032
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  22990081 tctatatatacatgtattctaacgtacattttgcttatgtgtcacctcac 22990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 37904153 - 37904098
Alignment:
Q  106 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    ||||| |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  37904153 tctatatctatatatacatgtattctaagctacatttttcctatgtgtcacctcac 37904098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 7574404 - 7574355
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  7574404 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 7574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 16668987 - 16668938
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  16668987 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 16668938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 29455077 - 29455130
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 167  Q
    |||||||| ||||||||||| |||||||||   ||||||||||||||| |||||    
T  29455077 tatatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatat 29455130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 31618628 - 31618575
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtcacttcactaatat 167  Q
    |||||||| || |||||||| ||||| |||||||||||||||| |||| |||||    
T  31618628 tatatatatatatattctaagctacactttgtttatgtgtcacctcaccaatat 31618575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 178 - 454
Target Start/End: Complemental strand, 22912735 - 22912459
Alignment:
Q  178 taactaatttttcatacttatgtcatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaa-ttgga 276  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattattta-tctttcatttcccatcaggttgca 22912637  T
Q  277 aaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaatagtgaggggttacattttaaaattattcatatt 376  Q
     |||| ||||||| |||||||||| || | |||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattcatatt 22912538  T
Q  377 cttagtcaatcatcttacacacacaagtttactataaagctcctcatt-ttttctaagctcatatatatgttgcttatg 454  Q
    |||| |||||| |||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  22912537 cttaatcaatcctcttacacacacgaatttactattaagctcctcatttttttctaagcttatatatatgttgcttatg 22912459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Original strand, 13786229 - 13786443
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13786328 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13786427  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  13786428 atatatgttgcttatg 13786443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 25807914 - 25807699
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||||||  ||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca--ttttttctaagctca 437  Q
    || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||  ||||||||||||| |    
T  25807815 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagctta 25807716  T
Q  438 tatatatgttgcttatg 454  Q
    |||||||||| ||||||    
T  25807715 tatatatgtttcttatg 25807699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 427
Target Start/End: Complemental strand, 23726278 - 23725986
Alignment:
Q  131 taaactacattttgtttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgtcatgtggctctcttttgttcttgattcttt 230  Q
    |||| |||||||||||||||||||||||||| |   | | | ||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  231 actagccattccttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataat 330  Q
    ||| | ||||| ||||||||| |||||||||||  ||||  ||| |||||| || |||| |||||| |||||| ||||| ||||||||||| ||||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  331 ccattttattaatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctcattttt 427  Q
    |||||||||||||| | |  ||||||||||| |||||||||||||||||| |||||| ||||   ||||||||||||||||||||||||||||||||    
T  23726079 ccattttattaatattaaacggttacatttt-aaattattcatattcttaatcaatcctctt--gcacacaagtttactataaagctcctcattttt 23725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 29679029 - 29679095
Alignment:
Q  97 atctctatctctatctctat--atatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  29679029 atctctatctctatctctctctatatacatgtattctaaactacactttgcttatgtgtcacctcac 29679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 39621645 - 39621692
Alignment:
Q  114 tatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcac 39621692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 13786058 - 13786107
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13786058 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 42332478 - 42332523
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttg 144  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  42332478 atctctatctctatctc--tatatacatgtattataaactacactttg 42332523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 454
Target Start/End: Complemental strand, 13433595 - 13433381
Alignment:
Q  243 ttactatctaatctttcatttcccatcaattggaaaaactctccattcacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 342  Q
    |||||||||| |||||||||| |||||| ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  343 tagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcat 438  Q
    || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |   |||||||||||||||||| ||||||||||||| ||    
T  13433496 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttat 13433397  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  13433396 atatatgttgcttatg 13433381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 340 - 454
Target Start/End: Complemental strand, 16712155 - 16712042
Alignment:
Q  340 taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca-ttttttctaagctcat 438  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| || ||||| ||||||| ||||||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gttcaccataaaactcctcatttttttctaagctcat 16712058  T
Q  439 atatatgttgcttatg 454  Q
    ||||||||||||||||    
T  16712057 atatatgttgcttatg 16712042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 18877355 - 18877405
Alignment:
Q  106 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcac 156  Q
    ||||||| | |||||||||||||||||| |||||||||| ||| |||||||    
T  18877355 tctatctatctatatacatgtattctaacctacattttgcttaggtgtcac 18877405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 8643634 - 8643585
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||| |||  |||||| ||||    
T  8643634 tctatatatacatgtattctaagctacattttgcttacatgtcacctcac 8643585  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 13433766 - 13433717
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    |||||||||||||||||||||| |||||||||   |||||||||| ||||    
T  13433766 tctatatatacatgtattctaacctacatttttcctatgtgtcacctcac 13433717  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 18882289 - 18882343
Alignment:
Q  97 atctctatctctatctctatatatacatgtattctaaactacattttgtttatgtgt 153  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| ||| ||||    
T  18882289 atctctatctctatctc--tatatacatgtattctaagctacactttgcttaggtgt 18882343  T

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Target: scaffold0713 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 7356 - 7411
Alignment:
Q  106 tctatctctatatatacatgtattctaaactacattttgtttatgtgtcacttcac 161  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||  |||||||||||    
T  7356 tctatctatatatatacatgtattttaagctacattttgcttacatgtcacttcac 7411  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 10170 - 10116
Alignment:
Q  372 atattcttagtcaatcatcttacacacacaagtttactataaagctcctcatttt 426  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||||    
T  10170 atatttttattctatcctcttacacacacaagtttactacaaagcttctcatttt 10116  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 1422 - 1381
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgt 153  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  1422 tctatatatacatgtattctaacctacattttgcctatgtgt 1381  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 5547 - 5503
Alignment:
Q  112 tctatatatacatgtattctaaactacattttgtttatgtgtcac 156  Q
    |||||||||||||||||||||| |||||||||   ||||||||||    
T  5547 tctatatatacatgtattctaacctacatttttcctatgtgtcac 5503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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