View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6907_low_6 (Length: 381)

Name: NF6907_low_6
Description: NF6907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6907_low_6
NF6907_low_6
[»] chr1 (18 HSPs)
chr1 (194-368)||(23915099-23915269)
chr1 (201-373)||(23922743-23922928)
chr1 (317-372)||(5253011-5253066)
chr1 (298-373)||(25803195-25803270)
chr1 (305-372)||(23989853-23989920)
chr1 (23-86)||(29523684-29523747)
chr1 (298-364)||(24436240-24436306)
chr1 (23-86)||(30878569-30878632)
chr1 (23-78)||(31468122-31468177)
chr1 (23-78)||(45239127-45239182)
chr1 (23-85)||(44651056-44651117)
chr1 (23-84)||(2478353-2478414)
chr1 (23-84)||(48388133-48388194)
chr1 (23-98)||(8464067-8464143)
chr1 (23-78)||(27630485-27630540)
chr1 (23-78)||(37420369-37420424)
chr1 (23-73)||(8468318-8468368)
chr1 (23-84)||(44334272-44334333)
[»] chr3 (31 HSPs)
chr3 (23-108)||(42601724-42601809)
chr3 (28-84)||(36178734-36178790)
chr3 (23-84)||(25832749-25832809)
chr3 (23-84)||(46572950-46573011)
chr3 (23-84)||(50415855-50415916)
chr3 (23-74)||(7521162-7521213)
chr3 (23-86)||(12974653-12974716)
chr3 (23-78)||(17466508-17466563)
chr3 (23-78)||(25790800-25790855)
chr3 (23-78)||(47144166-47144221)
chr3 (32-86)||(11908004-11908058)
chr3 (23-84)||(6048721-6048782)
chr3 (23-84)||(29701669-29701730)
chr3 (23-84)||(32120463-32120524)
chr3 (23-84)||(44084296-44084357)
chr3 (23-84)||(51999262-51999323)
chr3 (25-85)||(49028570-49028630)
chr3 (23-78)||(5845165-5845220)
chr3 (23-74)||(30418454-30418505)
chr3 (23-73)||(7008053-7008103)
chr3 (28-86)||(26165584-26165642)
chr3 (23-73)||(27847407-27847457)
chr3 (28-78)||(33748678-33748728)
chr3 (23-73)||(41183272-41183322)
chr3 (23-84)||(4045967-4046028)
chr3 (23-84)||(20139347-20139408)
chr3 (23-84)||(41890522-41890582)
chr3 (23-84)||(42560888-42560949)
chr3 (46-107)||(50033631-50033692)
chr3 (28-84)||(10426461-10426517)
chr3 (23-79)||(42601530-42601585)
[»] chr7 (13 HSPs)
chr7 (23-81)||(25218833-25218891)
chr7 (32-87)||(38970014-38970069)
chr7 (23-84)||(22191207-22191267)
chr7 (23-84)||(22737620-22737681)
chr7 (23-108)||(24793453-24793538)
chr7 (23-78)||(5813090-5813145)
chr7 (28-74)||(39769725-39769771)
chr7 (23-78)||(21654839-21654893)
chr7 (23-74)||(36518511-36518562)
chr7 (23-73)||(30720117-30720167)
chr7 (32-85)||(26812098-26812151)
chr7 (28-85)||(32130301-32130358)
chr7 (31-84)||(37951733-37951786)
[»] chr5 (20 HSPs)
chr5 (23-84)||(25032338-25032399)
chr5 (29-86)||(4219472-4219529)
chr5 (23-84)||(8176328-8176389)
chr5 (28-86)||(23089501-23089559)
chr5 (23-111)||(25652768-25652859)
chr5 (23-76)||(31013869-31013922)
chr5 (23-84)||(41263347-41263408)
chr5 (23-84)||(42317873-42317934)
chr5 (288-368)||(35074812-35074892)
chr5 (30-85)||(29619046-29619101)
chr5 (23-74)||(32976601-32976652)
chr5 (23-74)||(40888889-40888940)
chr5 (23-61)||(8681313-8681351)
chr5 (28-74)||(25670936-25670982)
chr5 (23-84)||(14278814-14278875)
chr5 (23-84)||(19241301-19241362)
chr5 (23-84)||(27942476-27942537)
chr5 (28-84)||(13479854-13479910)
chr5 (23-71)||(31008410-31008458)
chr5 (307-359)||(35079793-35079845)
[»] scaffold0012 (1 HSPs)
scaffold0012 (32-110)||(123975-124053)
[»] chr2 (19 HSPs)
chr2 (23-81)||(37245491-37245549)
chr2 (28-84)||(14152098-14152154)
chr2 (23-78)||(8852050-8852105)
chr2 (23-78)||(12855012-12855067)
chr2 (23-78)||(24997073-24997128)
chr2 (23-78)||(30822609-30822664)
chr2 (23-85)||(927917-927979)
chr2 (23-108)||(5146737-5146822)
chr2 (23-84)||(22351640-22351701)
chr2 (23-84)||(43021728-43021789)
chr2 (28-84)||(7588535-7588591)
chr2 (23-78)||(4296797-4296852)
chr2 (28-74)||(1308728-1308774)
chr2 (23-73)||(9117810-9117860)
chr2 (28-86)||(17485802-17485860)
chr2 (23-85)||(39490129-39490191)
chr2 (23-84)||(44279979-44280040)
chr2 (44-84)||(13151531-13151571)
chr2 (32-76)||(39434046-39434090)
[»] chr8 (17 HSPs)
chr8 (23-84)||(18029524-18029585)
chr8 (23-84)||(36912402-36912463)
chr8 (28-84)||(8610011-8610067)
chr8 (23-85)||(34955691-34955752)
chr8 (23-85)||(41477167-41477229)
chr8 (23-84)||(4625519-4625580)
chr8 (23-84)||(26632178-26632239)
chr8 (23-84)||(35931847-35931908)
chr8 (23-84)||(38584919-38584980)
chr8 (28-73)||(43525119-43525164)
chr8 (23-74)||(1958205-1958256)
chr8 (23-78)||(43618374-43618429)
chr8 (23-73)||(45101050-45101100)
chr8 (23-76)||(35099428-35099481)
chr8 (28-85)||(40283459-40283516)
chr8 (28-85)||(43524421-43524478)
chr8 (23-79)||(17741702-17741758)
[»] chr4 (21 HSPs)
chr4 (35-84)||(35394902-35394951)
chr4 (23-78)||(46917536-46917591)
chr4 (30-108)||(55947-56025)
chr4 (23-93)||(2215307-2215377)
chr4 (306-364)||(13435800-13435858)
chr4 (23-73)||(33604654-33604704)
chr4 (28-86)||(45081442-45081500)
chr4 (23-84)||(3533332-3533393)
chr4 (23-84)||(3618478-3618539)
chr4 (23-84)||(6290586-6290647)
chr4 (23-84)||(23540451-23540512)
chr4 (23-84)||(40721021-40721082)
chr4 (23-78)||(53184121-53184175)
chr4 (28-74)||(4981505-4981551)
chr4 (28-86)||(13094420-13094478)
chr4 (23-73)||(38173552-38173602)
chr4 (28-86)||(48403930-48403988)
chr4 (23-84)||(8991769-8991830)
chr4 (23-84)||(16020833-16020894)
chr4 (23-84)||(34199294-34199355)
chr4 (23-75)||(34464048-34464100)
[»] chr6 (10 HSPs)
chr6 (28-84)||(22627821-22627877)
chr6 (23-78)||(631509-631564)
chr6 (23-84)||(8660544-8660605)
chr6 (23-84)||(8669875-8669936)
chr6 (23-78)||(17961289-17961344)
chr6 (23-78)||(29428543-29428598)
chr6 (23-78)||(34328272-34328327)
chr6 (23-73)||(10883868-10883918)
chr6 (28-73)||(24348429-24348474)
chr6 (23-79)||(6380514-6380569)
[»] scaffold0100 (1 HSPs)
scaffold0100 (23-84)||(30563-30624)
[»] scaffold0362 (1 HSPs)
scaffold0362 (23-73)||(5348-5398)
[»] scaffold0054 (1 HSPs)
scaffold0054 (23-73)||(57768-57818)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 23915269 - 23915099
Alignment:
Q  194 ggtattgcattataatgcctataaattaagaaccctaagtaacgtttattctccattctcctcaacaacaaactaagtctattgtcaaaagagaaaatgg 293  Q
    |||| |||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915269 ggtactgcattataatgcctataaattaagaaccctaa----cgtctattctccattctcctcaacaacaaactaagtctattgtcaaaagagaaaatgg 23915174  T
Q  294 catattcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaa 368  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  23915173 catcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaacaccaa 23915099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 23922928 - 23922743
Alignment:
Q  201 cattataatgcctataaattaagaaccctaagtaacgtttattctccattctcctcaacaacaaactaagtctattgtc-------------aaaagaga 287  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||             ||||||||    
T  23922928 cattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctcaacaacaaaataagtctattgtccattataattaacaaaagaga 23922829  T
Q  288 aaatggcatattcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacca 373  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23922828 aaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacca 23922743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 5253011 - 5253066
Alignment:
Q  317 ttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacc 372  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  5253011 ttgctcaccatttcaatgatctctatttctcatgccatttcaccaacaccaacacc 5253066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 25803270 - 25803195
Alignment:
Q  298 ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacca 373  Q
    |||||| ||||||||  |||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||    
T  25803270 ttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaacaccatcacca 25803195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 23989853 - 23989920
Alignment:
Q  305 tatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacc 372  Q
    ||||||||| | || |||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  23989853 tatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaacaccaacacc 23989920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 29523747 - 29523684
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| |||||||||||    
T  29523747 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtgttgaaaa 29523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 24436306 - 24436240
Alignment:
Q  298 ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaaca 364  Q
    |||||| ||| ||||| | ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  24436306 ttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca 24436240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 30878569 - 30878632
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||| |||||||||||| || |||||||||||||||||| |||||||||||  | |||||||||    
T  30878569 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgagggttgttgaaaa 30878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 31468177 - 31468122
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  31468177 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 31468122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 45239182 - 45239127
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  45239182 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 45239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 44651117 - 44651056
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||| |||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||    
T  44651117 aagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaaa 44651056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 2478353 - 2478414
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  2478353 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 2478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 48388133 - 48388194
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  48388133 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 48388194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 8464143 - 8464067
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg-ttgaaaaagaaaatcattg 98  Q
    |||| |||||||||||| || |||||||  ||||||||| |||| |||||||||||| |||||| | ||||||||||    
T  8464143 aagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtgtttgaaagaaaaaatcattg 8464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 27630485 - 27630540
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||| |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  27630485 aagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 27630540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 37420369 - 37420424
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||| |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  37420369 aagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 37420424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8468368 - 8468318
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  8468368 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 8468318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44334333 - 44334272
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||  ||||||||| |||| ||||||||||| |||||    
T  44334333 aagagagagaaaatgatgtggagtgttgagaattgaaaaagtggatgttgaatggtattgaa 44334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 42601809 - 42601724
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 108  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||   |||| ||||||| |||||||    
T  42601809 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgttgaaaggaaaaaccattggagatggtct 42601724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 36178734 - 36178790
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||    
T  36178734 agagaaaatgatttgaagtgttgggaattgaaaaagtgggtgttgaagggtgttgaa 36178790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 25832749 - 25832809
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||    
T  25832749 aagagagagaaaatgatgtgaagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaa 25832809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 46572950 - 46573011
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  46572950 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 46573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 50415855 - 50415916
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||||||||||||| |||||||||||| | |||||||    
T  50415855 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaggttgttgaa 50415916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 7521162 - 7521213
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| ||||||||||||||||||||| | ||||||||||    
T  7521162 aagagagagaaaatgatctgaagtgttggaaattgaaaaagcgggtgttgaa 7521213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 12974716 - 12974653
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| ||| |||||||    
T  12974716 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 12974653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 17466563 - 17466508
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  17466563 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 17466508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 25790800 - 25790855
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  25790800 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 25790855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 47144221 - 47144166
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  47144221 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 47144166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 11908058 - 11908004
Alignment:
Q  32 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||| |||||||    
T  11908058 aaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaagggtattgaaaa 11908004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 6048721 - 6048782
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  6048721 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 6048782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 29701730 - 29701669
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  29701730 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 29701669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 32120463 - 32120524
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  32120463 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 32120524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44084357 - 44084296
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  44084357 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 44084296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 51999262 - 51999323
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  51999262 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 51999323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 49028570 - 49028630
Alignment:
Q  25 gatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||||||||||||||||| |||||||| |||| |||| ||| |||||||| ||| ||||||    
T  49028570 gatagagaaaatgatatggagtgttgggaattaaaaaagtgtgtgttgaagggtattgaaa 49028630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 5845165 - 5845220
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||| |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  5845165 aagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 5845220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 30418454 - 30418505
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  30418454 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 30418505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 7008103 - 7008053
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| |  |||||||||||||||||| |||||||||||    
T  7008103 aagagagagaaaatgatgtagagtgttggaaattgaaaaagtgggtgttga 7008053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26165584 - 26165642
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| |||||||    
T  26165584 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaaa 26165642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 27847457 - 27847407
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||||||||||||| |||| ||||||    
T  27847457 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 27847407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 33748728 - 33748678
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||||||||||| || ||||||||||||||||||  | |||||||||||||    
T  33748728 agagaaaatgatgtggagtgttggaaattgaaaaaataggtgttgaatggt 33748678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 41183322 - 41183272
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  41183322 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 41183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 4046028 - 4045967
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||    
T  4046028 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaa 4045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 20139408 - 20139347
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| ||||||||||  ||||||||| |||||| |||| || |||||||    
T  20139408 aagagagagaaaatgatgtgaagtgttgagaattgaaaaagtgggtattgagtgttgttgaa 20139347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 41890582 - 41890522
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| || | |||||||||||||||||    
T  41890582 aagagagagaaaatgatgtggagtgttgggaattgaaaaagt-gatgttgaatggtgttgaa 41890522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 42560949 - 42560888
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || | |||||| ||||||||| |||||||||||| | |||||||    
T  42560949 aagagagagaaaatgatgtggaatgttgggaattgaaaaagtgggtgttgaaggttgttgaa 42560888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 50033692 - 50033631
Alignment:
Q  46 tgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtc 107  Q
    ||||||||||| |||| |||| |||||||||||||| |||  ||||| ||||||| ||||||    
T  50033692 tgttggaaattaaaaaagtggatgttgaatggtgttaaaagggaaaaccattggagatggtc 50033631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 10426461 - 10426517
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| || |||||||| |||||||||  ||||||||||| | |||||||    
T  10426461 agagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaaggttgttgaa 10426517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 42601530 - 42601585
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 79  Q
    |||| |||||||||||| || |||||||| ||||||||| || ||||||||||||||    
T  42601530 aagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtg 42601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 25218833 - 25218891
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgtt 81  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  25218833 aagagagagaaaatgatatgaagtgttggaaattgaaaaagtggatgttaaatggtgtt 25218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 38970069 - 38970014
Alignment:
Q  32 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaa 87  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||||||||||||    
T  38970069 aaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaaaggtgttgaaaaa 38970014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 22191267 - 22191207
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||||||||||||| || |||||||||||||||||||    
T  22191267 aagagagagaaaatgatgtggagtgttggaaattgaaaaagt-ggtgttgaatggtgttgaa 22191207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 22737620 - 22737681
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  22737620 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgctgttgaa 22737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 24793538 - 24793453
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 108  Q
    |||| |||||||||||| || |||||||| | ||||||| | |||||||||||||||||||||   |||| ||||| |||||||||    
T  24793538 aagaaagagaaaatgatttggagtgttgggacttgaaaaagggggtgttgaatggtgttgaaaggaaaaaccattgaacatggtct 24793453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 5813145 - 5813090
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  5813145 aagagagagaaaatgatgtgcagtgttgggaattgaaaaagtgggtgttgaatggt 5813090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 39769771 - 39769725
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||||||||||| || |||||||||||||||||| ||||||||||||    
T  39769771 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttgaa 39769725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 21654893 - 21654839
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||||||||||||| || |||||||||||||    
T  21654893 aagagagagaaaatgatgtggagtgttggaaattgaaaaagt-ggtgttgaatggt 21654839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 36518562 - 36518511
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  36518562 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 36518511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 30720167 - 30720117
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||||||||||||| || ||||||||    
T  30720167 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtaggtgttga 30720117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 26812151 - 26812098
Alignment:
Q  32 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    ||||||||||| |||||||| |||||||||  ||||||||||| ||| ||||||    
T  26812151 aaaatgatatggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaa 26812098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 32130301 - 32130358
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||||||||||| || |||||||| |||| |||| |||||||||| ||||| ||||||    
T  32130301 agagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgcatggtattgaaa 32130358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 37951786 - 37951733
Alignment:
Q  31 gaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| |||||||| ||||||||| || ||||||||| | |||||||    
T  37951786 gaaaatgatatggagtgttgggaattgaaaaagtaggtgttgaaggttgttgaa 37951733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 25032399 - 25032338
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||||| ||| |||||    
T  25032399 aagagagagaaaatgatgtggagtgttggaaattgaaaaggtgggtgttgaacggtattgaa 25032338  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 4219472 - 4219529
Alignment:
Q  29 gagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||| ||| |||||||    
T  4219472 gagaaaatgatgtgaagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 4219529  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 8176328 - 8176389
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  8176328 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgatgttgaa 8176389  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 23089559 - 23089501
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| ||||||||||| |||| |||| |||||||||||| ||| |||||||    
T  23089559 agagaaaatgatgtgaagtgttgggaattaaaaaagtgggtgttgaagggtattgaaaa 23089501  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 25652859 - 25652768
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtg---ttgaatggtgttgaaaaagaaaatcattggacatggtctaac 111  Q
    |||| |||||||||||| ||||||||||| ||||||||| |||| ||   ||||||| |||||||| | |||| ||||| | ||||||||||    
T  25652859 aagagagagaaaatgatgtgaagtgttgggaattgaaaaagtggatgtaattgaatgatgttgaaagaaaaaaccattgtagatggtctaac 25652768  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 31013869 - 31013922
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 76  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||    
T  31013869 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatg 31013922  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 41263408 - 41263347
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || || ||||| ||||||||| |||| |||||||||||||||||    
T  41263408 aagagagagaaaatgatgtggagcgttgggaattgaaaaagtggatgttgaatggtgttgaa 41263347  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 42317934 - 42317873
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| ||||||||||||||| |||||||||||||||||| |||  ||||||| | |||||||    
T  42317934 aagagagagaaaatgatatggagtgttggaaattgaaaaagtgaatgttgaaggttgttgaa 42317873  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 35074892 - 35074812
Alignment:
Q  288 aaatggcatattcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaa 368  Q
    ||||||||  |||||| || |||||| ||||  |||  ||||||||||||||| ||| ||||||| |||||||||||||||    
T  35074892 aaatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttcaccaacaccaa 35074812  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 29619046 - 29619101
Alignment:
Q  30 agaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||||||||| || |||||||| ||||||||| |||||||||||| ||| ||||||    
T  29619046 agaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaa 29619101  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 32976601 - 32976652
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  32976601 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 32976652  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 40888940 - 40888889
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  40888940 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 40888889  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 8681313 - 8681351
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaa 61  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  8681313 aagaaagagaaaatgatatggagtgttggaaattgaaaa 8681351  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 25670936 - 25670982
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  25670936 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 25670982  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 14278875 - 14278814
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| |||||||||  |||||||||| || |||||||    
T  14278875 aagagagagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgagtgttgttgaa 14278814  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 19241362 - 19241301
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||  ||||||||| |||||||||||| | |||||||    
T  19241362 aagagagagaaaatgatgtggagtgttgagaattgaaaaagtgggtgttgaaggttgttgaa 19241301  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 27942537 - 27942476
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || ||||||||  |||||||| |||||||||||| | |||||||    
T  27942537 aagagagagaaaatgatgtggagtgttggggattgaaaaagtgggtgttgaaggttgttgaa 27942476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13479854 - 13479910
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| || |||||||| |||| |||| |||||||||||| ||| |||||    
T  13479854 agagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaagggtattgaa 13479910  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 31008410 - 31008458
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgtt 71  Q
    |||| |||||||||||| ||||||||||  ||||||||| |||||||||    
T  31008410 aagagagagaaaatgatgtgaagtgttgagaattgaaaaagtgggtgtt 31008458  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 35079845 - 35079793
Alignment:
Q  307 tttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcac 359  Q
    ||||||| ||||||||   ||||||||||||||| |||| |||||||||||||    
T  35079845 tttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcac 35079793  T

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Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 124053 - 123975
Alignment:
Q  32 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtctaa 110  Q
    |||||||| || |||||||||||||||||| |||| |||||||||||||||||| | |||| ||||  | |||||||||    
T  124053 aaaatgatgtggagtgttggaaattgaaaaagtggatgttgaatggtgttgaaagaaaaaaccattatagatggtctaa 123975  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 37245549 - 37245491
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgtt 81  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||||||||    
T  37245549 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggtgtt 37245491  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 14152098 - 14152154
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||||| |||||||    
T  14152098 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 14152154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 8852105 - 8852050
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  8852105 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 8852050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 12855067 - 12855012
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  12855067 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 12855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 24997128 - 24997073
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  24997128 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 24997073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 30822609 - 30822664
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  30822609 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 30822664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 927917 - 927979
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||| |||||||||||| || |||||||| |||| |||| ||||||||||||| |||||||||    
T  927917 aagagagagaaaatgatgtggagtgttgggaattaaaaaagtgggtgttgaatagtgttgaaa 927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 5146737 - 5146822
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 108  Q
    |||| |||||||||||| || ||||||||||||| ||||  ||||||||||| ||| |||||| | |||| ||||||  |||||||    
T  5146737 aagagagagaaaatgatgtggagtgttggaaattaaaaaaatgggtgttgaagggtattgaaagaaaaaaccattggggatggtct 5146822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 22351640 - 22351701
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  22351640 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 22351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 43021789 - 43021728
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  43021789 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 43021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 7588535 - 7588591
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  7588535 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 7588591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 4296797 - 4296852
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||||||||| || || |||||||| ||||||||| ||||||||||||||||    
T  4296797 aagagagagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 4296852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 1308728 - 1308774
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||||||||||| || |||||||||||||||||| |||| |||||||    
T  1308728 agagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaa 1308774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 9117860 - 9117810
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| ||||||||||| ||| ||||||| |||||||||| |||||||||||    
T  9117860 aagagagagaaaatgaaatggagtgttgaaaattgaaaaagtgggtgttga 9117810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 17485860 - 17485802
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| |||||||    
T  17485860 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaaa 17485802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 39490191 - 39490129
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||| ||||| |||||| || |||||||| ||||||||| |||||||||||| ||| ||||||    
T  39490191 aagagagagagaatgatttggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaa 39490129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44280040 - 44279979
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || ||||||| |||||||||| ||||||||| || | |||||||    
T  44280040 aagagagagaaaatgatgtggagtgttgaaaattgaaaaagtgggtgttaaaggttgttgaa 44279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 13151531 - 13151571
Alignment:
Q  44 agtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||| ||||||||| |||||||||||||| |||||||    
T  13151531 agtgttgggaattgaaaaagtgggtgttgaatgttgttgaa 13151571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 39434046 - 39434090
Alignment:
Q  32 aaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 76  Q
    |||||||| || | |||||||||||||||| ||||||||||||||    
T  39434046 aaaatgatgtggaatgttggaaattgaaaaagtgggtgttgaatg 39434090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 18029524 - 18029585
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||| |||||||||||||    
T  18029524 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgtcgaatggtgttgaa 18029585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 36912463 - 36912402
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| |  |||||||| ||||||||| ||||||||||||||||||||||    
T  36912463 aagagagagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 36912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 8610011 - 8610067
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    ||||||||||||||| |||||||| ||||||||| |||  |||||||||||||||||    
T  8610011 agagaaaatgatatggagtgttgggaattgaaaaagtgaatgttgaatggtgttgaa 8610067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 34955691 - 34955752
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||| |||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||    
T  34955691 aagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtgttgaaa 34955752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 41477229 - 41477167
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||| |||||||||||  || |||||||| ||||||||| |||| ||||||||||||||||||    
T  41477229 aagagagagaaaatgacgtggagtgttgggaattgaaaaagtggatgttgaatggtgttgaaa 41477167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 4625519 - 4625580
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| ||||||||| || || |||||||| ||||||||| ||| ||||||||||||||||||    
T  4625519 aagagagagaaaataatttggagtgttgggaattgaaaaagtgagtgttgaatggtgttgaa 4625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 26632178 - 26632239
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||  ||  ||||||| ||||||||| ||||||||||||||||||||||    
T  26632178 aagagagagaaaatgacgtggcgtgttgggaattgaaaaagtgggtgttgaatggtgttgaa 26632239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 35931908 - 35931847
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||||||||||||| |||| ||||||| | |||||||    
T  35931908 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttgaaggttgttgaa 35931847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 38584919 - 38584980
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||  || |||||||| ||||||||| ||| ||||||||||||||||||    
T  38584919 aagagagagaaaatgacgtggagtgttgggaattgaaaaagtgtgtgttgaatggtgttgaa 38584980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 43525119 - 43525164
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||||||||||| || |||||||||||||||||| |||||||||||    
T  43525119 agagaaaatgatgtggagtgttggaaattgaaaaagtgggtgttga 43525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 1958205 - 1958256
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  1958205 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 1958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 43618374 - 43618429
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| |||||| || ||||||||||||||||    
T  43618374 aagagagagaaaatgatgtggagtgttgggaattgataaagtgggtgttgaatggt 43618429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 45101050 - 45101100
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  45101050 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 45101100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 35099481 - 35099428
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatg 76  Q
    |||| |||||||||||| |  |||||||| ||||||||| ||||||||||||||    
T  35099481 aagagagagaaaatgatgtagagtgttgggaattgaaaaagtgggtgttgaatg 35099428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 40283516 - 40283459
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| ||||||    
T  40283516 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaaggtattgaaa 40283459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 43524421 - 43524478
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaa 85  Q
    |||||||||||| || |||||||| ||||||||| |||| ||||||| ||| ||||||    
T  43524421 agagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaagggtattgaaa 43524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 17741758 - 17741702
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 79  Q
    |||| |||||||||||| || ||| |||| ||||||||| |||| ||||||||||||    
T  17741758 aagagagagaaaatgatgtggagtcttgggaattgaaaaagtggatgttgaatggtg 17741702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 35394951 - 35394902
Alignment:
Q  35 atgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  35394951 atgatgtggagtgttggaaattgaaaaggtgtgtgttgaatggtgttgaa 35394902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 46917536 - 46917591
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  46917536 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 46917591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 55947 - 56025
Alignment:
Q  30 agaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaatcattggacatggtct 108  Q
    ||||||||||  | |||||||||||||||||| ||| ||||| ||||||||||||  | |||| ||||| |||||||||    
T  55947 agaaaatgatgcggagtgttggaaattgaaaaagtgagtgttcaatggtgttgaatgaaaaaaccattgtacatggtct 56025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 2215307 - 2215377
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaaagaaaat 93  Q
    |||| ||||||||| || || |||||||| ||||||||| |||||||||||||||| || ||||| |||||    
T  2215307 aagagagagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggtattaaaaaaaaaaat 2215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 13435800 - 13435858
Alignment:
Q  306 atttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaaca 364  Q
    |||||||| | ||||||||||| |||||||||||| ||||||| |||||||||| ||||    
T  13435800 atttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacgaaca 13435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 33604704 - 33604654
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    ||||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  33604704 aagatagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 33604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 45081442 - 45081500
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||| ||| |||||||    
T  45081442 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaagggtattgaaaa 45081500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 3533332 - 3533393
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  3533332 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 3533393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 3618478 - 3618539
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  3618478 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 3618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 6290647 - 6290586
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  6290647 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 6290586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 23540451 - 23540512
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| |  |||||||||||||||||| |||||||||||| | |||||||    
T  23540451 aagagagagaaaatgatgttgagtgttggaaattgaaaaagtgggtgttgaaggttgttgaa 23540512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 40721082 - 40721021
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||||  |||||||    
T  40721082 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatattgttgaa 40721021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 53184121 - 53184175
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| ||||||||||| ||||||||| || |||||||||||||    
T  53184121 aagagagagaaaatgatgtgaagtgttgggaattgaaaaagt-ggtgttgaatggt 53184175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 4981551 - 4981505
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaa 74  Q
    |||||||||||| || |||||||| ||||||||| ||||||||||||    
T  4981551 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaa 4981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 13094420 - 13094478
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| || |||||||| |||||||||  ||||||||||| ||| |||||||    
T  13094420 agagaaaatgatgtggagtgttgggaattgaaaaaatgggtgttgaagggtattgaaaa 13094478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 38173602 - 38173552
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  38173602 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 38173552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 48403930 - 48403988
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaaaa 86  Q
    |||||||||||| || |||||||||||||||||| |||  ||||||| ||| |||||||    
T  48403930 agagaaaatgatgtggagtgttggaaattgaaaaagtgaatgttgaagggtattgaaaa 48403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 8991830 - 8991769
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| |||| |||| |||||||||||| | |||||||    
T  8991830 aagagagagaaaatgatgtggagtgttgggaattcaaaaagtgggtgttgaaggttgttgaa 8991769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 16020894 - 16020833
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| ||||||||| || || |||||||| ||||||||| |||||||||||| | |||||||    
T  16020894 aagagagagaaaataatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 16020833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 34199294 - 34199355
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||    
T  34199294 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaaggttgttgaa 34199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 34464048 - 34464100
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaat 75  Q
    |||| |||||||||||| |||| ||||||||||| |||| || ||||||||||    
T  34464048 aagagagagaaaatgatgtgaaatgttggaaattaaaaaagttggtgttgaat 34464100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 22627877 - 22627821
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||||||||||| || |||||||||||||||||| ||||||||||| || |||||||    
T  22627877 agagaaaatgatgtggagtgttggaaattgaaaacgtgggtgttgagtgttgttgaa 22627821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 631564 - 631509
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  631564 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 631509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 8660605 - 8660544
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||| | |||||||    
T  8660605 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaaggttgttgaa 8660544  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 8669936 - 8669875
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| ||||||||| || ||||||||||||||||||||| |||| ||||||| | |||||||    
T  8669936 aagagagagaaaataatgtgaagtgttggaaattgaaaaagtggatgttgaaggttgttgaa 8669875  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 17961289 - 17961344
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||||||||| || || |||||||| ||||||||| ||||||||||||||||    
T  17961289 aagagagagaaaattatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 17961344  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 29428543 - 29428598
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| |||||||||||| || |||||||| ||||||||| |||| |||||||||||    
T  29428543 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtggatgttgaatggt 29428598  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 34328327 - 34328272
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggt 78  Q
    |||| ||| |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  34328327 aagagagataaaatgatgtggagtgttgggaattgaaaaagtgggtgttgaatggt 34328272  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 10883918 - 10883868
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||||||||||||| |||| ||||||    
T  10883918 aagagagagaaaatgatgtggagtgttggaaattgaaaaagtggatgttga 10883868  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 24348474 - 24348429
Alignment:
Q  28 agagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||||||||||| || |||||||| ||||||||| |||||||||||    
T  24348474 agagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 24348429  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 6380514 - 6380569
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtg 79  Q
    |||| |||||||||||| || |||||||| ||||||||| || ||||||||||||||    
T  6380514 aagagagagaaaatgatgtggagtgttgggaattgaaaaagt-ggtgttgaatggtg 6380569  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 30563 - 30624
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttgaatggtgttgaa 84  Q
    |||| ||||||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||    
T  30563 aagagagagaaaattatatggagtgttgagaattgaaaaagtggatgttgaatggtgttgaa 30624  T

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Target: scaffold0362 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 5348 - 5398
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  5348 aagaaagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 5398  T

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Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 57768 - 57818
Alignment:
Q  23 aagatagagaaaatgatatgaagtgttggaaattgaaaaggtgggtgttga 73  Q
    |||| |||||||||||| || |||||||| ||||||||| |||||||||||    
T  57768 aagagagagaaaatgatgtggagtgttgggaattgaaaaagtgggtgttga 57818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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