View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_high_2 (Length: 527)
Name: NF6908_high_2
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Original strand, 39586465 - 39586966
Alignment:
| Q |
13 |
attcttgcaagttcaagagatgatcaatcatgttattccccttctccttcttcctcctatgctcatcaatcaaaccctgcaaaaacccatcaaatcttct |
112 |
Q |
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| T |
39586465 |
attcttgcaagttcaagagatgatcaatcatgttattccccttctccttcttcctcctatgctcatcaatcaaaccttgcaaaaacccatcaaatcttct |
39586564 |
T |
|
| Q |
113 |
tgcaatccttttcaacttcttttcataaccaccaaaatcgaaccacctcaaaatcccaacaaattcaccaggattactcgaaccacccaacgataccatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586565 |
tgcaatccttttcaacttcttttcataaccaccaaaatcaaaccacctcaaaatcccaacaaattcaccaggattactcgaaccacccaacgataccatc |
39586664 |
T |
|
| Q |
213 |
tccttaatcatctccctaaatcccttagcttcttcttcatcactcacatcacaatcctcaccataatatctctttccagatatcattctcattatcgtgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586665 |
tccttaatcatctccctaaatcccttagcttcttcttcatcactcacatcacaatcctcaccataatatctctttccagatatcattctcattatcgtgt |
39586764 |
T |
|
| Q |
313 |
taaaagtcatctccgaaagctttgttttcaactccactctcgcaaaaccgtcg------ctagaactagaaccacgagctagggcttgcatgagtttcat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586765 |
taaaagtcatctccgaaagctttgttttcaactccactctcacaaaaccgtcgctagaactagaactagaaccacgagctagggcttgcatgagtttcat |
39586864 |
T |
|
| Q |
407 |
gatttcgttttttctaatacgtaaaaatgagtttaaacggtgtgttgagagaacgtcaagggagattatacgacggacgttacgccagtgatcgccataa |
506 |
Q |
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| T |
39586865 |
gatttcgttttttctaatacgtaaaaatgagtttaaacggtgtgttgagagaacgtcaagggagattatacgacggacgttacgccagtgatcgccataa |
39586964 |
T |
|
| Q |
507 |
gg |
508 |
Q |
| |
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|| |
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| T |
39586965 |
gg |
39586966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 38954439 - 38954399
Alignment:
| Q |
264 |
caatcctcaccataatatctctttccagatatcattctcat |
304 |
Q |
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||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
38954439 |
caatcatcaccatagtatctctttccagagatcattctcat |
38954399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 5884410 - 5884330
Alignment:
| Q |
250 |
catcactcacatcacaatcctcaccataatatctctttccagatatcattctcattatcgtgttaaaagtcatctccgaaa |
330 |
Q |
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||||||||||||||||||| | ||||| ||||| || || || | |||||||||||| || ||||| ||||| ||||||| |
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| T |
5884410 |
catcactcacatcacaatcatttccatagtatcttttccccgacaccattctcattatagtattaaatgtcatttccgaaa |
5884330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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