View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6908_high_3 (Length: 471)

Name: NF6908_high_3
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6908_high_3
NF6908_high_3
[»] chr8 (1 HSPs)
chr8 (43-321)||(12640472-12640750)
[»] chr4 (3 HSPs)
chr4 (168-290)||(48963324-48963446)
chr4 (43-276)||(48959057-48959290)
chr4 (69-285)||(48966271-48966487)
[»] chr2 (3 HSPs)
chr2 (54-290)||(13449290-13449526)
chr2 (69-286)||(13441142-13441359)
chr2 (54-318)||(13462311-13462572)
[»] chr6 (3 HSPs)
chr6 (168-280)||(12589219-12589331)
chr6 (162-290)||(12482477-12482605)
chr6 (43-114)||(12589370-12589441)
[»] chr5 (2 HSPs)
chr5 (168-246)||(12541714-12541792)
chr5 (159-290)||(28386360-28386491)
[»] chr7 (1 HSPs)
chr7 (96-220)||(3416622-3416746)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 321
Target Start/End: Complemental strand, 12640750 - 12640472
Alignment:
Q  43 tggaggacaatgattcaacaccatctgggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagaga 142  Q
    ||||||||||||||||||| || || || ||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  12640750 tggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagaga 12640651  T
Q  143 tttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatga 242  Q
    |||| |||||||||| || ||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12640650 tttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcacccaaaggaatcatatga 12640551  T
Q  243 ccaggtgatagaaatggaagcaagtaaagtttcaatggccgttcaactccgacactaccttccattgctgatcaatttt 321  Q
    ||||||| |||||||||||| | |  |||||||||||||||||||||||| |||| | |||||||||||||||| ||||    
T  12640550 ccaggtgctagaaatggaagtatgagaagtttcaatggccgttcaactccaacaccatcttccattgctgatcagtttt 12640472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 48963324 - 48963446
Alignment:
Q  168 ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt 267  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||  ||| ||||||  ||||    
T  48963324 ggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatgaagt 48963423  T
Q  268 aaagtttcaatggccgttcaact 290  Q
     |||||||||||| |||||||||    
T  48963424 gaagtttcaatggtcgttcaact 48963446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 43 - 276
Target Start/End: Original strand, 48959057 - 48959290
Alignment:
Q  43 tggaggacaatgattcaacaccatctgggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagaga 142  Q
    |||||||||  |||||||| || || |||||||| ||||| |||||||| || | |||   ||||||||||||||| || ||||| ||    ||||||||    
T  48959057 tggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggatcaacacttgagagaga 48959156  T
Q  143 tttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatga 242  Q
    |||| ||||||| || |  ||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||  || ||||||||     
T  48959157 tttggtaaagaagtgggagttggagggagtggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcacacatggggatcatatgc 48959256  T
Q  243 ccaggtgatagaaatggaagcaagtaaagtttca 276  Q
    ||||||| | || ||||||  |||| ||||||||    
T  48959257 ccaggtgctggatatggaatgaagtgaagtttca 48959290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 48966271 - 48966487
Alignment:
Q  69 gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag 168  Q
    ||||| || ||||| ||| |||||||||| |||||||||| ||||||||| |  ||||| | |||||  |||||||||  || ||| |  || || |  |    
T  48966271 gggagaccaacttgttggtaggggaaatcaacggtgtgaatgcggaggaagagaggatctatggagggaagagatttggaaaggaagttggcgttagagg 48966370  T
Q  169 gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagta 268  Q
    |||| |||||||| ||||||||||||||||| |||||||| | |||||||||||||| || ||| |||||||| || |||| |||| ||||||  ||||     
T  48966371 gagttgtgatgatggtgacttgttggccatgagatgcaaagatagttgctatgtcacacatagggatcatatggcctggtgctagatatggaatgaagtg 48966470  T
Q  269 aagtttcaatggccgtt 285  Q
    |||||||| ||| ||||    
T  48966471 aagtttcagtggtcgtt 48966487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 54 - 290
Target Start/End: Original strand, 13449290 - 13449526
Alignment:
Q  54 gattcaacaccatctgggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaaga 153  Q
    ||||||| ||| || |||||||||||||| ||||||||||| || ||||||||||| || |||||  | ||| || |||| |||||||||||| ||| |     
T  13449290 gattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaaggg 13449389  T
Q  154 aatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatag 253  Q
    | |  || ||||| |||||||||||||  || ||||| |||||| |||||||||||| |||||||||||||   | ||| |||||||| |||| ||  ||    
T  13449390 attttgcgttggcgggagtggtgatgactgttacttgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatatgtccagatgcaag 13449489  T
Q  254 aaatggaagcaagtaaagtttcaatggccgttcaact 290  Q
    ||||||||  ||||||| |||||||||  ||||||||    
T  13449490 aaatggaatgaagtaaactttcaatggttgttcaact 13449526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 13441142 - 13441359
Alignment:
Q  69 gggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcag 168  Q
    |||||| ||||||| |||||||| || ||||||||||| | ||||||||| || | | |  |||| |||||||||||| | | | | ||||| ||||  |    
T  13441142 gggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagg 13441241  T
Q  169 gagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagta 268  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||  | ||| |||||||| |||| || |||| ||||||  ||||     
T  13441242 gagtggtgatgattgtgacttgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcatatgtccagatgctagatatggaatgaagtg 13441341  T
Q  269 aagtttcaatggccgttc 286  Q
    || ||||| ||| |||||    
T  13441342 aattttcagtggtcgttc 13441359  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 318
Target Start/End: Original strand, 13462311 - 13462572
Alignment:
Q  54 gattcaacaccatctgggaggccgacttgctgggaggggaaatcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaaga 153  Q
    |||||||  ||||| || ||||| ||||| ||||||||||| |||| |||||||| ||| ||||   | ||| || |||| |||||||||||| ||| |     
T  13462311 gattcaatgccatcaggaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaaggg 13462410  T
Q  154 aatgagcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatag 253  Q
    | ||  | ||||  |||||||||||||  ||||| ||||||||| |||||||||||| | |||||||||||   | ||| |||||||| |||| || |||    
T  13462411 attggacgttggagggagtggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcatatgtccagatgctag 13462510  T
Q  254 aaatggaagcaagtaaagtttcaatggccgttcaactccgacactaccttccattgctgatcaat 318  Q
    | ||||||  ||||  ||||||| |||  |||||||| | ||   ||||||||||||||| ||||    
T  13462511 atatggaatgaagtgcagtttcagtggttgttcaacttctac---accttccattgctgaacaat 13462572  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 12589331 - 12589219
Alignment:
Q  168 ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaagcaagt 267  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||| ||||| |||||||  | ||| |||||||| |||||||||||| ||||||  ||||    
T  12589331 ggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagagggatcatatgcccaggtgatagatatggaatgaagt 12589232  T
Q  268 aaagtttcaatgg 280  Q
     |||||| |||||    
T  12589231 gaagttttaatgg 12589219  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 12482605 - 12482477
Alignment:
Q  162 ttggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatggaa 261  Q
    |||| ||||||||||||||| ||||| || |||||| | ||||||||||||||||| || |  | || ||| |||||||| ||||||| | |||||||||    
T  12482605 ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaa 12482506  T
Q  262 gcaagtaaagtttcaatggccgttcaact 290  Q
      |||| |||||||||||| |||||||||    
T  12482505 tgaagtgaagtttcaatggtcgttcaact 12482477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 12589441 - 12589370
Alignment:
Q  43 tggaggacaatgattcaacaccatctgggaggccgacttgctgggaggggaaatcgacggtgtgaaggcgga 114  Q
    |||||||||| ||||| ||||| || ||||||||||||||  ||||||||||||| ||| ||||||||||||    
T  12589441 tggaggacaaagattcgacaccgtcagggaggccgacttgtagggaggggaaatctacgatgtgaaggcgga 12589370  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 12541714 - 12541792
Alignment:
Q  168 ggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccag 246  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||  | ||| |||||||| ||||    
T  12541714 ggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgctatatcacaaagagggatcatatgtccag 12541792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 290
Target Start/End: Original strand, 28386360 - 28386491
Alignment:
Q  159 gcattggcaggagtggtgatgatcgtgacttgttggccatgggatgcaaacagagttgctatgtcacccaaaggaatcatatgaccaggtgatagaaatg 258  Q
    |||||||  |||||||||||||| ||||| ||||||||| | |||||||||| ||||||||| ||||  |  || |||||||| |||| || | || | |    
T  28386360 gcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcatatgtccagatgctggatacg 28386459  T
Q  259 gaagcaagtaaagtttcaatggccgttcaact 290  Q
    |||  |||| |||||||||||| | |||||||    
T  28386460 gaatgaagtgaagtttcaatggtctttcaact 28386491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 3416746 - 3416622
Alignment:
Q  96 tcgacggtgtgaaggcggaggaaaaacggatcgacggaggagagagatttgctaaagaaatgagcattggcaggagtggtgatgatcgtgacttgttggc 195  Q
    ||||||||||||||||||||||| || ||| || |  | || ||||||||  |||  || |  |||||||  |||||||||||||| ||||| |||||||    
T  3416746 tcgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgacatgttggc 3416647  T
Q  196 catgggatgcaaacagagttgctat 220  Q
    ||||||||||||||| || ||||||    
T  3416646 catgggatgcaaacatagctgctat 3416622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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