View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6908_high_6 (Length: 292)
Name: NF6908_high_6
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 15152549 - 15152823
Alignment:
| Q |
1 |
catggtggtatggccaaaatgtaactaaaaatttgaacatatgacaatgggggagcacattttttacaaaatattctccttcatgcttatagcactcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
15152549 |
catggtggtatggccaaaatgtaactaaaaatttgaacatatgacaatgggggagcacatttttttcaaaatattctccttcatgcttacagcactcatt |
15152648 |
T |
|
| Q |
101 |
gaannnnnnnn-cttcattaaattcattatccactcatcaagttctaaacccatcaggcccatcaatatacaatattctttgagttcaagatcaataata |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152649 |
gattttttttttcttcattaaattcattatccactcatcaagttctaaacccatcaggcccatcaatatacaatattctttgagttcaagatcaataata |
15152748 |
T |
|
| Q |
200 |
attcatgatgaataattccaacgtacgtatattgaagtttttcgtgataaaacatggtacatgctatgcttatat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152749 |
attcatgatgaataattccaacgtacgtatgttgaagtttttcgtgataaaacatggtacatgctatgcttatat |
15152823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University