View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_high_7 (Length: 250)
Name: NF6908_high_7
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 16624476 - 16624252
Alignment:
| Q |
19 |
aattttggtggtagttatacaagattcatgttcaaaattagatcttgaatttattctcactacatgatctggccatttaataccttgacacctttttgaa |
118 |
Q |
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| T |
16624476 |
aattttggtggtagttatacaagattcatgttcaaaattagatcttgaatt-attctcactacatgatcagagcatttaataccttgacacctttttgaa |
16624378 |
T |
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| Q |
119 |
cattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcttgaaggcctcctgtgttgacctgacaaacattaaactagaa |
218 |
Q |
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| T |
16624377 |
cattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcctgaagtcctcctgtgttgacctgacaaacattaaactagaa |
16624278 |
T |
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| Q |
219 |
caatgataggcgatatgaacacgaaa |
244 |
Q |
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| T |
16624277 |
caatgataggcgatatgaacatgaaa |
16624252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 56240541 - 56240662
Alignment:
| Q |
97 |
aataccttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcttgaaggcctcctgtgttga |
196 |
Q |
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| T |
56240541 |
aataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgttga |
56240640 |
T |
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| Q |
197 |
cctgacaaacattaaactagaa |
218 |
Q |
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| T |
56240641 |
gctgtgaaacattaaacaagaa |
56240662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 23946954 - 23947051
Alignment:
| Q |
102 |
cttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcttgaaggcctcctgtgttgacct |
199 |
Q |
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| T |
23946954 |
cttgacacctttacgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagacccagtgtgttgacct |
23947051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 16105990 - 16105893
Alignment:
| Q |
102 |
cttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcttgaaggcctcctgtgttgacct |
199 |
Q |
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||||||||||||| ||| ||||||| ||||||| ||||| ||||||||||||| ||| |||| |||||||||||| ||||| || ||||||||||| |
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| T |
16105990 |
cttgacaccttttcgaaaattatggaaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagacccagtgtgttgacct |
16105893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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