View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_1 (Length: 1143)
Name: NF6908_low_1
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 1035; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1035; E-Value: 0
Query Start/End: Original strand, 18 - 1132
Target Start/End: Complemental strand, 26276274 - 26275162
Alignment:
| Q |
18 |
gttaccctctctattgatgattcccatgataggctgaattggagggcctccgttgatggaaaacttactagcaaaattgcgcctataacaccttgcgcat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276274 |
gttaccctctctattgatgattcccatgataggctgaattggagggcctctgttgatggaaaacttactagcaaaattgcgcctataacaccttgcgcat |
26276175 |
T |
|
| Q |
118 |
ctttggtcctaaggtgaggtggtgtaagttagtttggaacaatttcgtccctccctctaggtctttcattttctggagattagctaacaacaagatgccg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276174 |
ctttggtcctaaggtgaggtggtgtaagttagtttggaacaatttcgtccctcc-tctaggtctttcattttctggagattagctaacaacaagatgccg |
26276076 |
T |
|
| Q |
218 |
actgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276075 |
actgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattcttcagctgcc |
26275976 |
T |
|
| Q |
318 |
cagaaacgcagaagctttggcagaggttatgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattgg |
417 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275975 |
cagaaacgcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgttggtaattga |
26275876 |
T |
|
| Q |
418 |
agcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcatt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275875 |
agcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataataatgcgcatt |
26275776 |
T |
|
| Q |
518 |
cgatggaacatctgtttcggagtgttattgtggaagtaggctgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatcaca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275775 |
cgatggaacatctgtttcggagtgttattgtggaagtaggctgtagcttcaacataattcaagcttctaaatctgctatgctggatgccaaattatcaca |
26275676 |
T |
|
| Q |
618 |
tctgtttgacctatatctgagctggcatttataaaggaaaaattggatgccaacttaaacttgcaaatgacaatgaagaattgggatggctagaaacttg |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26275675 |
tctgtttgacctatatctgagctggcatttataaaggaaaaattggatactaacataaacttgcaaatgacaatgaagaattgggttggctagaaacttg |
26275576 |
T |
|
| Q |
718 |
tattcacgtgctcttggatcacaactcaatgttgcaaatataaattgcggcgactgcaatcgtagcacttcgatacaggtacgatacattgcatgtaact |
817 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
26275575 |
tattcacgtgctcttggatcacatctcaatgttgcaaatataaattgcggcgactgcaatcgtagcgcttcgatacaggtacgatgcattgcatgtaact |
26275476 |
T |
|
| Q |
818 |
gttgagacatttaagttttagatgtacatcagtgccaaaatacatgtcataaacccgcaacataatagcaggccaaatgaaacttcacatacaagcaata |
917 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275475 |
gttgagacattgaagttttagatctacatcagtgccaaaatacatgtcataaacccgcaacataatagcaggccaaatgaaacttcacatacaagcaata |
26275376 |
T |
|
| Q |
918 |
tggtcgacattttctacctggtgtaagatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttgggcttca |
1017 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26275375 |
tggtcgacattttctacctggtgtaatatttcatgttaggtagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtttgatcttca |
26275276 |
T |
|
| Q |
1018 |
tattcacatcctcgacaatttgtcagtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttattttcc |
1117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26275275 |
tattcacatcctcgacaatttgtcagtcacaagtaaccttaaacaaccttttgtttattactcagctgccacttggctgagttctttatatttatttt-c |
26275177 |
T |
|
| Q |
1118 |
cacttgtttcttctc |
1132 |
Q |
| |
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||||||||||||||| |
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| T |
26275176 |
cacttgtttcttctc |
26275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 940 - 1008
Target Start/End: Original strand, 26250817 - 26250885
Alignment:
| Q |
940 |
gtaagatttcatgttagttagtttttaccaactgcaatgccactgttctcacctttcccatcttcagtt |
1008 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
26250817 |
gtaagatttcatgttaggtagtttctaccacctgcaataccaactttctcacctttcccatcttcagtt |
26250885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 403 - 528
Target Start/End: Complemental strand, 39397955 - 39397830
Alignment:
| Q |
403 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
502 |
Q |
| |
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||||||||||||||||||||| ||| ||||| || || |||||||| |||||||||| | |||| || || ||||||||||||||| | ||||||| |
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| T |
39397955 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcggttctgcacacggtttggaagatttagatagaacgtaatgagcgttatttca |
39397856 |
T |
|
| Q |
503 |
ataataatgcgcattcgatggaacat |
528 |
Q |
| |
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||||||| ||| ||||| |||||||| |
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| T |
39397855 |
ataataaggcgaattcgttggaacat |
39397830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 43673526 - 43673411
Alignment:
| Q |
209 |
aagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattct |
308 |
Q |
| |
|
|||||||| || ||||| ||||||| |||| | ||||| | ||||| | |||| ||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
43673526 |
aagatgccaacggatgaaaatcttaggaaacgaggctgcacaattgttttgatttgttgtttctgtcatcaacatgaagaaacctccagtcatattttct |
43673427 |
T |
|
| Q |
309 |
tcagctgcccagaaac |
324 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
43673426 |
tcagctgcccagaaac |
43673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 23893197 - 23893301
Alignment:
| Q |
403 |
tgtgttggtaattggagcaaacaggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttca |
502 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || ||||||||||||||||||| | |||| || ||| ||||| |||||||| | ||||||| |
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| T |
23893197 |
tgtgttggtaattggagcaaagcggtgcagcaagtcttaatagcagcagttctgcacacagtttggaagatttgaatagatcgtaatgagcgttatttca |
23893296 |
T |
|
| Q |
503 |
ataat |
507 |
Q |
| |
|
||||| |
|
|
| T |
23893297 |
ataat |
23893301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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