View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_11 (Length: 237)
Name: NF6908_low_11
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 7293279 - 7293469
Alignment:
| Q |
36 |
cttagaggaacaaggtgtttccagggatatcaattaagcaagagcatgtgtaaatatacaagaaacacaatataattttttcagataataatataaacct |
135 |
Q |
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| T |
7293279 |
cttagagaaacaaggtgtttccagggatatcaattaagcaagagcatgtgtaaatatacaagaaacacaatataattttttcagataataatataaacct |
7293378 |
T |
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| Q |
136 |
ttgatagccagtgaagactgtaagagcagtggacgaaatgcagacttcgatcaggaaaaactctatcatagaaagaaccaggaacaccaaa |
226 |
Q |
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| T |
7293379 |
ttgatagccagtgaagactgtaagagcagtggacgaaatgcagacttcgatcaggaaaaactctatcatagaaagaaccaggaacaccaaa |
7293469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 7297805 - 7297943
Alignment:
| Q |
87 |
aaatatacaagaaacacaatataattttttcagataataatataaacctttgatagccagtgaagactgtaagagcagtggacgaaatgcagacttcgat |
186 |
Q |
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| T |
7297805 |
aaatatacaagaaacacaatataaaaaat-caggtaacaatatttacctttgatagccactgaaggctgtgagaggaatgaatgaaatgtaaacttcgat |
7297903 |
T |
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| Q |
187 |
caggaaaaactctatcatagaaagaaccaggaacaccaaa |
226 |
Q |
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| T |
7297904 |
taggaaaaactctactatagaaagaaccaggaaccccaaa |
7297943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 32709626 - 32709716
Alignment:
| Q |
130 |
aaacctttgatagccagtgaagactgtaagagcagtggacgaaatgcagacttcgatcaggaaaaactctatcatagaaagaaccaggaac |
220 |
Q |
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| T |
32709626 |
aaaccttagatagccacataaggctgtaagaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaac |
32709716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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