View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6908_low_12 (Length: 222)

Name: NF6908_low_12
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6908_low_12
NF6908_low_12
[»] chr6 (1 HSPs)
chr6 (6-204)||(28667520-28667718)
[»] chr8 (1 HSPs)
chr8 (39-80)||(35653477-35653518)
[»] chr4 (3 HSPs)
chr4 (28-83)||(34835542-34835597)
chr4 (29-80)||(41621726-41621777)
chr4 (19-83)||(9646336-9646400)
[»] chr3 (2 HSPs)
chr3 (28-83)||(4252525-4252580)
chr3 (38-83)||(33417961-33418006)
[»] chr1 (2 HSPs)
chr1 (28-78)||(3334794-3334844)
chr1 (28-81)||(40802196-40802249)
[»] chr7 (1 HSPs)
chr7 (38-83)||(23330878-23330923)
[»] chr2 (1 HSPs)
chr2 (28-83)||(33901515-33901570)
[»] chr5 (1 HSPs)
chr5 (28-82)||(930614-930668)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 28667718 - 28667520
Alignment:
Q  6 ccaatgagatggacatcagaacgaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccactattataataaagagtatgaccat 105  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  28667718 ccaacgagattgacaccagaacgaatcaaacatgagaccttaagaagagcacactttaaaatctcaagccaaccactattataataaagagtatgactat 28667619  T
Q  106 ccgaagataggtctnnnnnnnnnnnnnnnnnncatctccaatagatgataactttaggtttcttatagtgatccccacatgacataataaattttaggg 204  Q
    |||| |||||||||                  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28667618 ccgacgataggtctaaaaataaaataaaaaaacatctccaatagataataactttaggtttcttatagtgatccccacatgacataataaattttaggg 28667520  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 35653477 - 35653518
Alignment:
Q  39 gagaccttaagaagagcacactctaaaatctcaagccaacca 80  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  35653477 gagaccttaagatgagcacactctaaaatctcaagccaacca 35653518  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 34835597 - 34835542
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    ||||| ||||||||||||||||| ||||| ||||||| ||| ||||||||||||||    
T  34835597 gaatcgaacatgagaccttaagaggagcaaactctaagatcccaagccaaccacta 34835542  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 41621726 - 41621777
Alignment:
Q  29 aatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaacca 80  Q
    |||||||||||||||||| ||| ||||| |||| || |||||||||||||||    
T  41621726 aatcaaacatgagaccttgagaggagcaaactccaagatctcaagccaacca 41621777  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 9646336 - 9646400
Alignment:
Q  19 catcagaacgaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    |||||||  ||||||||||||||||||| | | |||||||||| || ||| ||| ||||||||||    
T  9646336 catcagagagaatcaaacatgagaccttgacaggagcacactcaaagatcccaaaccaaccacta 9646400  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 4252525 - 4252580
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    ||||||||| ||||||||| ||| |||||||||| || ||||||||||||||||||    
T  4252525 gaatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccacta 4252580  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 33417961 - 33418006
Alignment:
Q  38 tgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    |||||||||||| | | |||||||||||||||||| ||||||||||    
T  33417961 tgagaccttaaggaaaacacactctaaaatctcaaaccaaccacta 33418006  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 3334844 - 3334794
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaac 78  Q
    ||||| ||| ||||||||| ||||||||||||||||| |||||||||||||    
T  3334844 gaatcgaacttgagaccttgagaagagcacactctaagatctcaagccaac 3334794  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 40802196 - 40802249
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccac 81  Q
    ||||||||||||||||||| ||| ||||| |||| || ||||||||||||||||    
T  40802196 gaatcaaacatgagaccttgagatgagcaaactccaatatctcaagccaaccac 40802249  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 23330878 - 23330923
Alignment:
Q  38 tgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  23330878 tgagaccttgagaggagcacactctaaaatcccaagccaaccacta 23330923  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 33901570 - 33901515
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccacta 83  Q
    ||||||||||||||| ||||||| ||| | ||||||| |||||||| |||||||||    
T  33901570 gaatcaaacatgagatcttaagaggagtaaactctaagatctcaagtcaaccacta 33901515  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 930614 - 930668
Alignment:
Q  28 gaatcaaacatgagaccttaagaagagcacactctaaaatctcaagccaaccact 82  Q
    ||||| ||| |||||| || ||| ||||| |||||||||||||||||||||||||    
T  930614 gaatcgaacctgagactttgagaggagcaaactctaaaatctcaagccaaccact 930668  T

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