View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_13 (Length: 207)
Name: NF6908_low_13
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 6602205 - 6602273
Alignment:
| Q |
120 |
caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagc |
188 |
Q |
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| T |
6602205 |
caacaattgagagagcttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagc |
6602273 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 6609735 - 6609788
Alignment:
| Q |
135 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagc |
188 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6609735 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagc |
6609788 |
T |
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