View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_2 (Length: 572)
Name: NF6908_low_2
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 5174070 - 5173509
Alignment:
| Q |
1 |
tctcctttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaaataaattatgtgcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5174070 |
tctcctttgtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaattaaattatgtgcata |
5173971 |
T |
|
| Q |
101 |
cactccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173970 |
cactccaaaaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactc |
5173871 |
T |
|
| Q |
201 |
ttaatggagagttgtatcaccctcgtgactctatttaactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173870 |
ttaatggagagttgtatcaccctcgtgactctatttaactcgagggattagtctatatagttgcacgtgaaggatatccgatttacaacgataaataatt |
5173771 |
T |
|
| Q |
301 |
atgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173770 |
atgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttca |
5173671 |
T |
|
| Q |
401 |
aaaggttcgtcatcc-aaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggta |
499 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173670 |
aaaggttcgtcatccaaaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggta |
5173571 |
T |
|
| Q |
500 |
gcacaagcaactgataatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtt |
561 |
Q |
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| T |
5173570 |
gcacaagcaactgataatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtt |
5173509 |
T |
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