View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_6 (Length: 331)
Name: NF6908_low_6
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 9302185 - 9302496
Alignment:
| Q |
7 |
tatggtggtatgaatgtgggc--agtgttaggaaccatgaatatagagaattcaatctttctatcagatggaaatccatttgtgatatttatgtttgttg |
104 |
Q |
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| T |
9302185 |
tatggaggtatgaatgtgggctgagtgttaggaaccatgaatatagagaattcaatctttctatcagatggaaatccatttgtgatatttatgtttgttg |
9302284 |
T |
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| Q |
105 |
tccctaataatcaaatgtaacttcaccatcacgctaagaataatcaatcaatgtataatatcatttaaattgtctcttgcaagaatcttgcttactacct |
204 |
Q |
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| T |
9302285 |
tccctaataatcaaatgtaacttcaccatcacgctaagaataatcaatcaatgtataatatcatttaaattgtctcttgcaagaatcttgcttactacct |
9302384 |
T |
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| Q |
205 |
ccatttagctttcgttgcctaatctgaagtgtcaagttcaaaatatccgcaaagtagtacaattagataaaaccacaaatccaaatttagtgaactactt |
304 |
Q |
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| T |
9302385 |
ccatttagctttcgttgcctaatctgaagtgtcaagttcaaaacatccgcaaagtagtacaattagataaaaccacaaatccaaatttagtgaactactt |
9302484 |
T |
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| Q |
305 |
gcacacgtcttt |
316 |
Q |
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| T |
9302485 |
gcacacgtcttt |
9302496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 16102637 - 16102568
Alignment:
| Q |
83 |
tttgtgatatttatgtttgttgtccctaataatcaaatgtaacttcaccatcacgctaagaataatcaat |
152 |
Q |
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| T |
16102637 |
tttgtgatattgatctttagtgtcccaaatgaccaaatataacttcaccatcatgctaagaataatcaat |
16102568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 16102508 - 16102437
Alignment:
| Q |
218 |
gttgcctaatctgaagtgtcaagttcaaaatatccgcaaagtagtacaattagat--aaaaccacaaatcca |
287 |
Q |
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| T |
16102508 |
gttgcctaatctaaagtgccaagctcgaaacctccgcaaagtaacacaattagatccaaaaccacaaatcca |
16102437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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