View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6908_low_9 (Length: 246)
Name: NF6908_low_9
Description: NF6908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6908_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 1046788 - 1046573
Alignment:
| Q |
14 |
gtatggtgtttatactattagcataacactagaaacctatgaaattgggcattccactatatacatggtgtatctaatcagtgttgcagtagagctcata |
113 |
Q |
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| T |
1046788 |
gtatggtgtttatactattagcataacactagaaacctatgaaattgggcattccactatataaatggtgtttctaatcagtgttgcagtagagctcata |
1046689 |
T |
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| Q |
114 |
tgaaatgtattattgcctaaagattttgacaaaagtatttaaactcatccacaaaatcacgcttcactgccaaatcctcaagagccgatctttcaccttt |
213 |
Q |
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| T |
1046688 |
tgaaatgtattcttgcctaaagattttgacaaaagtatttaaactcatccacaaaatcacgcttcactgccaaatcctcaagagccgatctttcaccttt |
1046589 |
T |
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| Q |
214 |
caagcaaccaccaaga |
229 |
Q |
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| T |
1046588 |
caagcaaccaccaaga |
1046573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 1010842 - 1010922
Alignment:
| Q |
136 |
attttgacaaaagtatttaaactcatccacaaaatcacgcttcactgccaaatcctcaagagccgatctttcacctttcaa |
216 |
Q |
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| T |
1010842 |
attttgattaaaatatctaaaatcatccataaaaccatgcttcagtgcaaaatcctcaagagcctatctttcacctttcaa |
1010922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 1023878 - 1023955
Alignment:
| Q |
133 |
aagattttgacaaaagtatttaaactcatccacaaaatcacgcttcactgccaaatcctcaagagccgatctttcacc |
210 |
Q |
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| T |
1023878 |
aagattttaataaaaatatctaaaatcatccataaaaccatgcttcattgcaaaatcctcaagagcttatctttcacc |
1023955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 40642050 - 40641967
Alignment:
| Q |
133 |
aagattttgacaaaagtatttaaactcatccacaaaatcacgcttcactgccaaatcctcaagagccgatctttcacctttcaa |
216 |
Q |
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||||||||||||||| ||| |||| || |||| |||| || |||||| || |||||||||||||| |||||||||||||||| |
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| T |
40642050 |
aagattttgacaaaaatatctaaaatcgtccataaaaccatgcttcagtgaaaaatcctcaagagcttatctttcacctttcaa |
40641967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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