View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6909_high_1 (Length: 599)
Name: NF6909_high_1
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 1842659 - 1843226
Alignment:
| Q |
18 |
caccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcnnnnnn |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842659 |
caccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaa |
1842758 |
T |
|
| Q |
118 |
nnnnnnntaatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842759 |
tcaaaaataatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgtt |
1842858 |
T |
|
| Q |
218 |
gtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
1842859 |
gtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaac |
1842958 |
T |
|
| Q |
318 |
atggaaaactcgtcttaagatagccgcagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |
|
|
| T |
1842959 |
atggaaaactcgtcttaagatagccgcagaggtagctgaaactttgtcatatctacattcatatgcctcaataccaataatccatagagatgtcaagagt |
1843058 |
T |
|
| Q |
418 |
gataacattctcttagatggaaccaacactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgc |
517 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1843059 |
gataacattctcttagatagaaccaacacagccaaagtatcagattttggagcttcaagattggttccaattgatcaaactgaaatagccacaatggtgc |
1843158 |
T |
|
| Q |
518 |
aaggaactattggctatttggatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
585 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843159 |
aaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
1843226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Original strand, 1868269 - 1868835
Alignment:
| Q |
19 |
accaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcnnnnnnn |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1868269 |
accaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaat |
1868368 |
T |
|
| Q |
119 |
nnnnnntaatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttg |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868369 |
caaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttg |
1868468 |
T |
|
| Q |
219 |
tttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
1868469 |
tttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaaca |
1868568 |
T |
|
| Q |
319 |
tggaaaactcgtcttaagatagccgcagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
1868569 |
tggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtg |
1868668 |
T |
|
| Q |
419 |
ataacattctcttagatggaaccaacactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgca |
518 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868669 |
ataacattctcttagatagaaccaacaccgccaaagtatcggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgca |
1868768 |
T |
|
| Q |
519 |
aggaactattggctatttggatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
585 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868769 |
aggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
1868835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 126 - 585
Target Start/End: Original strand, 1856781 - 1857237
Alignment:
| Q |
126 |
aatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagag |
225 |
Q |
| |
|
|||||| | ||||||||| | ||||||||||||||||| | || |||||||||||||||| || ||||| ||||||||||| ||||||||| |||| |
|
|
| T |
1856781 |
aatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaa |
1856880 |
T |
|
| Q |
226 |
acagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaacatggaaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| || ||||||| ||||| ||||||||| ||| || |||| || ||| ||||| | |
|
|
| T |
1856881 |
acagaagttcctttgttggtttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggta---agacgaatgatccaacttggaaga |
1856977 |
T |
|
| Q |
326 |
ctcgtcttaagatagccgcagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| || |||||||||||||||||| |||||||||| |
|
|
| T |
1856978 |
ctcgtcttaagatagccgcagaggtagctgaggctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacat |
1857077 |
T |
|
| Q |
426 |
tctcttagatggaaccaacactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaact |
525 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857078 |
tctcttagatggaaccaacaccgccaaagtgtcggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaact |
1857177 |
T |
|
| Q |
526 |
attggctatttggatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
585 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857178 |
attggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtc |
1857237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 135 - 584
Target Start/End: Complemental strand, 1816254 - 1815808
Alignment:
| Q |
135 |
aagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagtt |
234 |
Q |
| |
|
||||||||| | ||||||||||| ||||| | || |||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
1816254 |
aagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagtt |
1816155 |
T |
|
| Q |
235 |
cctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaacatggaaaactcgtctta |
334 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| || ||||||| ||| | | |||| || ||| || ||| || || |||||||||||||||| |
|
|
| T |
1816154 |
cctttgttggtttatgagtttgttagcaatggtactctttctgaatttcttcgcacacaaggta---agacgaacgatcttacttggaaaactcgtctta |
1816058 |
T |
|
| Q |
335 |
agatagccgcagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttaga |
434 |
Q |
| |
|
|||||| | |||||||||| | || |||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1816057 |
ggatagctgttgaggtagctggagctctgtcatatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttaga |
1815958 |
T |
|
| Q |
435 |
tggaaccaacactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctat |
534 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1815957 |
tggaaccaacaccgctaaagtgtcagattttggagcatcaaggttgattccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctac |
1815858 |
T |
|
| Q |
535 |
ttggatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
1815857 |
ttggatccagagtatatgcaaacaagccaattaactgagaaaagtgatgt |
1815808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 148 - 584
Target Start/End: Complemental strand, 9218975 - 9218539
Alignment:
| Q |
148 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt |
247 |
Q |
| |
|
|||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
9218975 |
caattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttccttcgttggtgt |
9218876 |
T |
|
| Q |
248 |
atgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtat---taaggtgaataatgaaacatggaaaactcgtcttaagatagccgc |
344 |
Q |
| |
|
|||||||||||| ||| || || |||| || ||| ||||| ||| ||| ||| | || ||| | |||||||||| ||| | | |||||| || |
|
|
| T |
9218875 |
atgaatttgttagcaacggaacactttttgatttcataca---aaattgtaaagataaagcaaacaatccagcatggaaaacacgtttaaggatagcagc |
9218779 |
T |
|
| Q |
345 |
agaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaac |
444 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||| ||| ||||| || ||||||||||||||||| ||| || ||||||||||| |||| | || |
|
|
| T |
9218778 |
agagacagctggtgctttatcatatctacattcagctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattac |
9218679 |
T |
|
| Q |
445 |
actgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatccag |
544 |
Q |
| |
|
||||| ||||| || || || |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||| || || ||||||| |
|
|
| T |
9218678 |
actgcaaaagtttccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcgacaatggtacaaggaactcttggatacttagatccag |
9218579 |
T |
|
| Q |
545 |
agtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
9218578 |
agtatatgcaaacacatcaattaaccgaaaaaagtgatgt |
9218539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 151 - 584
Target Start/End: Complemental strand, 9162063 - 9161630
Alignment:
| Q |
151 |
ttcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatg |
250 |
Q |
| |
|
|||||||| |||||| || |||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9162063 |
ttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttcgttggtgtatg |
9161964 |
T |
|
| Q |
251 |
aatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggt |
350 |
Q |
| |
|
|||| |||| |||||| || |||| | ||| ||||| | | ||| | || ||| |||||||||||| ||| | |||||||| |||||| |
|
|
| T |
9161963 |
aattcgttagcaatggtacacttttcgatttcatacataatactaaagataaagcaaacaatccaacatggaaaacacgtttaaagatagcagcagagac |
9161864 |
T |
|
| Q |
351 |
agctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaacactgcc |
450 |
Q |
| |
|
||| | | |||| || ||| ||||||||| ||| |||||||||||||||||||||||||| ||| || |||||||||||||||| | ||| ||| |
|
|
| T |
9161863 |
agccggagctttatcgtatttacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatgacaattacaatgca |
9161764 |
T |
|
| Q |
451 |
aaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatccagagtata |
550 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||||||||| || ||||| |||||||| ||||||||| |||| || || ||||| ||||||| |
|
|
| T |
9161763 |
aaagtttctgattttggagcttcgaggttggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggttacttagatccggagtata |
9161664 |
T |
|
| Q |
551 |
tgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
|||||||| |||| |||| || ||||||||||| |
|
|
| T |
9161663 |
tgcaaacacatcaactaacagagaaaagtgatgt |
9161630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 148 - 584
Target Start/End: Complemental strand, 9170892 - 9170456
Alignment:
| Q |
148 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt |
247 |
Q |
| |
|
|||||||||||||||||| || |||| | |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||| | |
|
|
| T |
9170892 |
caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt |
9170793 |
T |
|
| Q |
248 |
atgaatttgttaccaatggcaccctttctggttttataca---cacaaaacgtattaaggtgaataatgaaacatggaaaactcgtcttaag-atagccg |
343 |
Q |
| |
|
| |||||||||| ||| || || |||| | ||| ||||| ||| ||| || | |||||| |||||||||||| || |||||| ||||| | |
|
|
| T |
9170792 |
acgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaaca---aataatccaacatggaaaacccg-cttaaggatagcag |
9170697 |
T |
|
| Q |
344 |
cagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaa |
443 |
Q |
| |
|
||||| ||||| | |||| || ||||||||||||| ||| ||||| || ||||||||||||||||| ||| || ||||||||||| |||| | | |
|
|
| T |
9170696 |
cagagacagctggagctttatcgtatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaatta |
9170597 |
T |
|
| Q |
444 |
cactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatcca |
543 |
Q |
| |
|
|||||||||||| || || || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| || || ||||| |
|
|
| T |
9170596 |
cactgccaaagtttccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatccc |
9170497 |
T |
|
| Q |
544 |
gagtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
9170496 |
gagtatatgcaaacacataaattaaccgaaaaaagtgatgt |
9170456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 148 - 584
Target Start/End: Complemental strand, 9229860 - 9229424
Alignment:
| Q |
148 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt |
247 |
Q |
| |
|
|||||||| |||||||| || || | || |||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| | |||| |
|
|
| T |
9229860 |
caattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagttt |
9229761 |
T |
|
| Q |
248 |
atgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtatt---aaggtgaataatgaaacatggaaaactcgtcttaagatagccgc |
344 |
Q |
| |
|
|||||||| ||| |||||| ||||||| | ||| || ||||| | ||||| |||| ||||||| || ||||||||| ||| | | |||||| || |
|
|
| T |
9229760 |
atgaatttattagcaatggtacccttttcgatttgatgcacacta---gtattgaaaaggaaaataatgcaatatggaaaacgcgtttaaggatagcagc |
9229664 |
T |
|
| Q |
345 |
agaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaac |
444 |
Q |
| |
|
|| |||| | | |||| |||||||||||||||| ||| || |||| |||||||||||||||||||| ||| ||||||||||| |||| | || |
|
|
| T |
9229663 |
ggaaatagcaggagctttatcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattac |
9229564 |
T |
|
| Q |
445 |
actgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatccag |
544 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||| |||| ||||||||| |||||||||| ||||||| |
|
|
| T |
9229563 |
actgcaaaagtgtctgattttggtgcttcaagattggttccacttgatcatactatgatagccactgtggtacaaggaactcttggctatttagatccag |
9229464 |
T |
|
| Q |
545 |
agtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
| |||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
9229463 |
aatatatgcaaacacaccaactaacagagaaaagtgatgt |
9229424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 154 - 585
Target Start/End: Complemental strand, 9156148 - 9155717
Alignment:
| Q |
154 |
attaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaat |
253 |
Q |
| |
|
|||||||||||| || | || || ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9156148 |
attaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttccttggtttatgaat |
9156049 |
T |
|
| Q |
254 |
ttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagc |
353 |
Q |
| |
|
| |||| |||||| || |||| || ||| ||||| | | ||| || ||| |||||||||||| ||| | |||||||| |||||| ||| |
|
|
| T |
9156048 |
tcgttagcaatggtacactttttgatttcatacatagtactaaagataaaacaaacaatccaacatggaaaacccgtttaaagatagcagcagagacagc |
9155949 |
T |
|
| Q |
354 |
tgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaacactgccaaa |
453 |
Q |
| |
|
| | |||| || ||||||||||||| ||| |||||||| |||||||||||||||||||| || ||||||||||| |||| | |||| || ||| |
|
|
| T |
9155948 |
cggagctttatcgtatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgacaattacacagcgaaa |
9155849 |
T |
|
| Q |
454 |
gtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatccagagtatatgc |
553 |
Q |
| |
|
|| || |||||||||||||| || || ||||||||||||||||| || ||||| |||||||| ||||||||| |||| || | |||||||||||||||| |
|
|
| T |
9155848 |
gtttccgattttggagcttcgaggttagttccacttgatcaaaccgagatagcaacaatggttcaaggaactcttggatacctagatccagagtatatgc |
9155749 |
T |
|
| Q |
554 |
aaacaagtcaattaactgaaaaaagtgatgtc |
585 |
Q |
| |
|
|||| ||||||||| || |||||||||||| |
|
|
| T |
9155748 |
aaactcatcaattaaccgagaaaagtgatgtc |
9155717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 139 - 584
Target Start/End: Original strand, 9118377 - 9118822
Alignment:
| Q |
139 |
caaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctt |
238 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
9118377 |
caaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagacagaagttcctt |
9118476 |
T |
|
| Q |
239 |
tgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacaaaacgtattaaggtgaataatgaaacatggaaaactcgtcttaagat |
338 |
Q |
| |
|
||||| |||||||| |||| | | || || |||| | ||| ||||| | | | ||| | |||||| || |||| |||| ||||| | ||| |
|
|
| T |
9118477 |
ccttggtctatgaattcgttagccacggtacacttttcgatttcatacaaaatactaagaataaaataaataatccaagatgggaaacacgtctaaggat |
9118576 |
T |
|
| Q |
339 |
agccgcagaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatgga |
438 |
Q |
| |
|
||| |||||| ||||| | |||| || ||||||||||||| ||| ||| | || ||||||||||||||||| ||| || ||||||||||| |||| |
|
|
| T |
9118577 |
agcagcagagacagctggagctttatcgtatctacattcatctgcatcatttccaattatccatagagatgttaagagtaccaacattctcttggatgac |
9118676 |
T |
|
| Q |
439 |
accaacactgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttgg |
538 |
Q |
| |
|
| ||||||| ||||| || ||||| |||||||| | ||||||||||||||||||||| || ||||| ||| |||| |||||||| |||| || || | |
|
|
| T |
9118677 |
aattacactgcaaaagtttccgatttcggagcttccaaattggttccacttgatcaaaccgagatagcaacagtggtacaaggaacacttggatacttag |
9118776 |
T |
|
| Q |
539 |
atccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
| |||||||| |||||||| ||||||||| || ||||||||||| |
|
|
| T |
9118777 |
acccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgt |
9118822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 148 - 584
Target Start/End: Complemental strand, 9200459 - 9200023
Alignment:
| Q |
148 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt |
247 |
Q |
| |
|
|||||||||||||||||| || |||| | |||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||| || || | |
|
|
| T |
9200459 |
caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagttccttcattagtgt |
9200360 |
T |
|
| Q |
248 |
atgaatttgttaccaatggcaccctttctggttttataca---cacaaaacgtattaaggtgaataatgaaacatggaaaactcgtcttaagatagccgc |
344 |
Q |
| |
|
| |||||||||| ||| || || |||| | ||| ||||| ||| ||| || | |||||| |||||||||||| ||| | | |||||| || |
|
|
| T |
9200359 |
acgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaaca---aataatccaacatggaaaacacgtttaaggatagcagc |
9200263 |
T |
|
| Q |
345 |
agaggtagctgaatctttgtcatatctacattcatatgcctcaatacctattatccatagagatgtcaagtgtgataacattctcttagatggaaccaac |
444 |
Q |
| |
|
||| ||||| | |||| ||||||||||||||| ||| ||||| || |||||||| |||||||| ||| || ||||||||||| |||| | || |
|
|
| T |
9200262 |
ggagacagctggagctttatcatatctacattcagctgcatcaattccaattatccacagagatgttaagagtaccaacattctcttggatgacaattac |
9200163 |
T |
|
| Q |
445 |
actgccaaagtgtcagattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctatttggatccag |
544 |
Q |
| |
|
|| || ||||| || || ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| || || ||||| | |
|
|
| T |
9200162 |
accgcaaaagtttctgactttggagcttccagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccg |
9200063 |
T |
|
| Q |
545 |
agtatatgcaaacaagtcaattaactgaaaaaagtgatgt |
584 |
Q |
| |
|
|||||||||||||| |||| |||| || ||||||||||| |
|
|
| T |
9200062 |
agtatatgcaaacacatcaactaaccgagaaaagtgatgt |
9200023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 9171000 - 9170959
Alignment:
| Q |
40 |
ttaatcattggcaaaggtggttttggtactgtttacaaagga |
81 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
9171000 |
ttaatcattggcagaggaggttttggtacagtttacaaagga |
9170959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 9178982 - 9178941
Alignment:
| Q |
40 |
ttaatcattggcaaaggtggttttggtactgtttacaaagga |
81 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
9178982 |
ttaatcattggcagaggaggttttggtacagtttacaaagga |
9178941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 37572123 - 37572203
Alignment:
| Q |
211 |
gggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacaca |
291 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||||| ||||||| |||||| || ||||||| |||||||||||| |
|
|
| T |
37572123 |
gggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactctttctgaatttatacacaca |
37572203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37567745 - 37567806
Alignment:
| Q |
148 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactctt |
209 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37567745 |
caattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtcaaactctt |
37567806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 40568387 - 40568463
Alignment:
| Q |
178 |
caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt |
254 |
Q |
| |
|
||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
40568387 |
caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgcttgtttatgaatt |
40568463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 40591285 - 40591369
Alignment:
| Q |
170 |
ttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt |
254 |
Q |
| |
|
|||| |||||||| || ||||| ||||| || | | | ||||| ||||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
40591285 |
ttctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaatt |
40591369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 40597775 - 40597863
Alignment:
| Q |
178 |
caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg |
266 |
Q |
| |
|
||||| || ||||||||||| || ||||| | || ||||||||||| ||||||||||| ||| | |||||||||||| || ||||||| |
|
|
| T |
40597775 |
caaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaatgg |
40597863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 40579436 - 40579533
Alignment:
| Q |
169 |
attctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg |
266 |
Q |
| |
|
||||| || ||||| |||||||| ||||| || || | ||||| ||||||||||||||||||||||| || | ||||| |||||| || ||||||| |
|
|
| T |
40579436 |
attctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattcccaatgg |
40579533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 40573016 - 40573076
Alignment:
| Q |
206 |
tcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg |
266 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || | || ||||||||| || ||||||| |
|
|
| T |
40573016 |
tcttgggctgttgtttagagacagaagttcccttagttgtgtatgaatttattcccaatgg |
40573076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 2015349 - 2015288
Alignment:
| Q |
178 |
caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt |
239 |
Q |
| |
|
||||| || ||||| ||||| || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
2015349 |
caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt |
2015288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University