View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_high_10 (Length: 306)
Name: NF6909_high_10
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 38464444 - 38464731
Alignment:
| Q |
10 |
cgtgttagtatcggtgcatcataggagacaacaataaacaaatggggcatcttcaaacaaagataaacatgcaatgg------gaattgaataagaataa |
103 |
Q |
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| T |
38464444 |
cgtgttagtatgggtgcatcataggagacaacaataaacaaatggggcatcttcaaacaaagataaacatgcaatggttatgggaattgaataagaataa |
38464543 |
T |
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| Q |
104 |
acacatgaacagacaaagattaagaaaagaaagtgatcaaacaaaagaaactatgatcaaaaattcattcatgatctcttaaaaacataacatttcattt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38464544 |
acacatgaacagacaaagattaagaaaagaaagtgatcaaacaaaagaaactatgatcaaaaattcattcatgatctcttaaaaacataacctttcattt |
38464643 |
T |
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| Q |
204 |
cataacaacacaaaaacatgaaaggggaacaaactcagagataatcacaaaaatcgcaagaaacgaaacggaaattacgaattgaaaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38464644 |
cataacaacacaaaaacatgaaaggggaacaaactcagagataatcacaaaaatcgcaagaaacgaaacggaaattacgaattgaaaa |
38464731 |
T |
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