View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_high_11 (Length: 280)
Name: NF6909_high_11
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 30010069 - 30009817
Alignment:
| Q |
9 |
gattattctagtagcaaataaatctgatttgagtcaatcaagggaagttgagaaagaagaaggaaaagggtttgcagaaaaagaaggtttatgttttatg |
108 |
Q |
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| T |
30010069 |
gattattctagtagcaaataaatctgatttgagtcaatcaagggaagttgagaaagaagaaggaaaagggtttgcagaaaaagaaggtttatgttttatg |
30009970 |
T |
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| Q |
109 |
gaaacttctgcattgcaaaatttaaatgttgaagatgcattcttagaaatgattactaagatccatgatatcataagtcataaaagcttggaagataaaa |
208 |
Q |
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| T |
30009969 |
gaaacttctgcattgcaaaatttaaatgttgaagatgcattcttagaaatgattactaagatccatgatatcataagccataaaagcttggaagataaaa |
30009870 |
T |
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| Q |
209 |
tgaatggtacaaaattagggcttcctaatggtaaggaaattcatatagctgat |
261 |
Q |
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| T |
30009869 |
tgaatggtacaaaattagggcttcctaatgggaaggaaattcatatagctgat |
30009817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 45232357 - 45232249
Alignment:
| Q |
11 |
ttattctagtagcaaataaatctgatttgagtcaatcaagggaagttgagaaagaagaaggaaaagggtttgcagaaaaagaaggtttatgttttatgga |
110 |
Q |
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|||||||||| | ||| |||| |||| | || ||||||| ||||||||| ||||||||| |||| |||||||||| |||||| || ||||||||||| |
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| T |
45232357 |
ttattctagttggaaacaaatgtgatcttggtgaatcaagagaagttgaggaagaagaagcaaaaaggtttgcagaggcagaagggttgtgttttatgga |
45232258 |
T |
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| Q |
111 |
aacttctgc |
119 |
Q |
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||| ||||| |
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| T |
45232257 |
aacctctgc |
45232249 |
T |
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