View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_high_16 (Length: 230)
Name: NF6909_high_16
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_16 |
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| [»] scaffold0496 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 8302988 - 8303181
Alignment:
| Q |
22 |
gtgacttggacatttgtagagcatggatttgaatatttctcatgcttcatataatgttttattccaacacccaatttttgcatgtttgtttatttgtaac |
121 |
Q |
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| T |
8302988 |
gtgacttggacatttgtagagcatggatttgaatatttctcatgcttcacataatgttttattccaacacccaatttttgcatgtttgtttatttgtaac |
8303087 |
T |
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| Q |
122 |
aagagcttaatatgcttcaactttagaagtaatgttataatggtggcctagattcactagcaaattttcaggtgttggaatattagtaacctag |
215 |
Q |
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| T |
8303088 |
aagagcttaatatgcttcaactttagaagtaatgttataatggtggcctagattcactagcaaattttcaggtgttggaatattagtaacctag |
8303181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 32641716 - 32641838
Alignment:
| Q |
87 |
aacacccaatttttgcatgtttgtttatttgtaacaagagcttaatatgcttcaactttagaagtaatgttataatggtggcctagattcactagcaaat |
186 |
Q |
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|||| ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
32641716 |
aacatccaatttttccatgtttgtttatttgtaacatgagttcaatatgcttcaactttagaagtaatgttagaatggtggcctagattcattagcaaat |
32641815 |
T |
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| Q |
187 |
tttcaggtgttggaatattagta |
209 |
Q |
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| T |
32641816 |
tagcaggtgttggaatattagta |
32641838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 8772 - 8717
Alignment:
| Q |
21 |
tgtgacttggacatttgtagagcatggatttgaatatttctcatgcttcatataat |
76 |
Q |
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| T |
8772 |
tgtgacttggacatttgtggagcatggatttgaatctttcccatgtttcacataat |
8717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 62476 - 62383
Alignment:
| Q |
115 |
ttgtaacaagagcttaatatgcttcaactttagaagtaatgttataatggtggcctagattcactagcaaattttcaggtgttggaatattagt |
208 |
Q |
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| T |
62476 |
ttgtaacaagagttgaatatgcttcatcctcacaagtaatgttagaatggtagcctagatttatttgcatattagcaggtgtttgaatattagt |
62383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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