View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_high_17 (Length: 229)
Name: NF6909_high_17
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 10758835 - 10758944
Alignment:
| Q |
118 |
tatagcaacaacattaatcagtattttgcacgatacctcttataaatacatcaccttcttcaacaatcctataaagtaatacttatacaactaaaattga |
217 |
Q |
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| T |
10758835 |
tatagcaacaacattaatcaggactttgcacaatacctcttataaatacatcaccttcttcaacaatcctataaagtaatacttacacaact-aaattga |
10758933 |
T |
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| Q |
218 |
aaacaagaaaa |
228 |
Q |
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| T |
10758934 |
aaacaagaaaa |
10758944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 10758394 - 10758432
Alignment:
| Q |
191 |
aagtaatacttatacaactaaaattgaaaacaagaaaat |
229 |
Q |
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| T |
10758394 |
aagtaatacttatacaactaaaattgaaaacaagaaaat |
10758432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 7964348 - 7964416
Alignment:
| Q |
48 |
ctaaagatgttgatcagttgaccaacgaccatgaacaataattcaaacagtaccaaaacggtaacatta |
116 |
Q |
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| T |
7964348 |
ctaaagttgttgtccagtttaccaacgaccatgaacggtaacccaaacagtaacaaaacggtaacatta |
7964416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 18062009 - 18062046
Alignment:
| Q |
150 |
atacctcttataaatacatcaccttcttcaacaatcct |
187 |
Q |
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| T |
18062009 |
atacctcctataaatacatcactttcttcaacaatcct |
18062046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 7961790 - 7961838
Alignment:
| Q |
48 |
ctaaagatgttgatcagttgaccaacgaccatgaacaataattcaaaca |
96 |
Q |
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| T |
7961790 |
ctaaagttgttgacgagttgactaacgaccatgaacagtaattcaaaca |
7961838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 9124332 - 9124178
Alignment:
| Q |
40 |
aaagaccactaaagatgttgatcagttgaccaacgaccatgaacaata---attcaaacagtaccaaaacggtaacatta----gtatagcaacaaca-- |
130 |
Q |
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| T |
9124332 |
aaagatcactaaagatgttgaccagttgaccaacggctatgaacagtagtaatccaaaca-taccaaaacgacaacattatcaagtatagcaacaacaac |
9124234 |
T |
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| Q |
131 |
-ttaatcagtattttgcacgatacctcttataaatacatcaccttcttcaacaatc |
185 |
Q |
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| T |
9124233 |
attaatcagtattttgcacaatacctcctataaatacatcaccttcttcaacaatc |
9124178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 19660615 - 19660649
Alignment:
| Q |
150 |
atacctcttataaatacatcaccttcttcaacaat |
184 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
19660615 |
atacctcttataaatacatcaccttcttcaacaat |
19660649 |
T |
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