View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_high_18 (Length: 224)
Name: NF6909_high_18
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 9615936 - 9616066
Alignment:
| Q |
1 |
aaaaaacagaaacacaacaatcagtttgaagcacaaacgattgaaaacaagctctcacaagggtaaaaagagtggagaactgataaaactaaaaggaaga |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9615936 |
aaaaagcagaaacacaacaatcagtttgaagcacaaacgattgaaaacaagctctcacaagggtaaaaagagtggagaactgataaaactaaaaggaaga |
9616035 |
T |
|
| Q |
101 |
tggtgaaaaccctaggagagaaagcggcggc |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9616036 |
tggtgaaaaccctaggagagaaagcggcggc |
9616066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11517310 - 11517432
Alignment:
| Q |
1 |
aaaaaacagaaacacaacaatcagtttgaagcacaaacgattgaaaacaagctctcacaagggtaaaaagagtggagaactgataaaactaaaaggaaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11517310 |
aaaaaacagaaacacaacaatcagtttgaagcacaaacgattgaaaacaagctctcacaagggtaaaaagagtggagaactgataaaactaaaaggaaga |
11517409 |
T |
|
| Q |
101 |
tggtgaaaaccctaggagagaaa |
123 |
Q |
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||||||||||||||||||||||| |
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| T |
11517410 |
tggtgaaaaccctaggagagaaa |
11517432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 42218165 - 42218120
Alignment:
| Q |
157 |
gcaataattgatagtcgcaatgaataatatcttcttgattattttt |
202 |
Q |
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| T |
42218165 |
gcaataattgatagtcacaatgaataatatcttcttgattattttt |
42218120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 3391613 - 3391568
Alignment:
| Q |
157 |
gcaataattgatagtcgcaatgaataatatcttcttgattattttt |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
3391613 |
gcaataattgatagtcacaatgaataatatcttcttgatttttttt |
3391568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 47584608 - 47584563
Alignment:
| Q |
157 |
gcaataattgatagtcgcaatgaataatatcttcttgattattttt |
202 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
47584608 |
gcaataattgacagtcacaatgaataatatcttcttgatttttttt |
47584563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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