View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_10 (Length: 439)
Name: NF6909_low_10
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 20454752 - 20454322
Alignment:
| Q |
1 |
tcacaaactttgtgtcgacgatgatagtcctttgcgttactaagatccgccctacaatcctccacctgacaaacagcacgatttgaagtaggcacaggcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454752 |
tcacaaactttgtgtcgacgatgatagtcctttgcgttactaagatccgccctacaatcctccacctgacaaacagcacgatttgaagtaggcacaggcg |
20454653 |
T |
|
| Q |
101 |
caatctttgtctttttaccactcttttcctccccatccattatagggtaaacttgacccccaagattcaaattaagagaaccaaaatcatcgttcatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454652 |
caatctttgtctttttaccactcttttcctccccatccattatagggtaaacttgacccccaagattcaaattaagagaaccaaaatcatcgttcatctc |
20454553 |
T |
|
| Q |
201 |
caacccttcaccaccaaaacccctcctcctcttctccaactctctacttccttcaccagaaaccaaattattcgaaacatcaacattttcacgtatttcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20454552 |
caacccttcaccaccaaaacccctcctcctcttctccaactctctactaccttccccagaaatcaaattattcgaaacatcaacattttcacgtatttcg |
20454453 |
T |
|
| Q |
301 |
ggtaaatattgacgattcctacaatccgtcggcaccgaattcaattgcttagccgtaaaaagatcaccatcccatctccaatcatttaaatcccaatcct |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20454452 |
ggtaaaaattgacgattcctacaatccgtcggcaccgaattcagttgcttagcagtaaaaagatcaccatcccatctccaatcattcaaatcccaatcct |
20454353 |
T |
|
| Q |
401 |
tactccccctaccaacaacacccttcatctc |
431 |
Q |
| |
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||||||||||||||||| ||||||||||||| |
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| T |
20454352 |
tactccccctaccaacagcacccttcatctc |
20454322 |
T |
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