View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_11 (Length: 404)
Name: NF6909_low_11
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 35783659 - 35784043
Alignment:
| Q |
7 |
tttggtggtccgagctgcaggaaaggcagaacaagacgaatactttgttagattccattaacaatcatagttaaataaatgtaatatctgaggnnnnnnn |
106 |
Q |
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| T |
35783659 |
tttggtggtccgagctgcaggaaaggcagaacaagacgaatactttgttagattccattaacaatcatagttaaataaatgtaatatctgaggaaaaaaa |
35783758 |
T |
|
| Q |
107 |
gatgcatgaccaaacgagtaccttttccttcaacttatttataatagcgtcataagactcgaaaccatcgtgattacgttgtattttctcaaccttggca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783759 |
gatgcatgaccaaacgagtaccttttccttcaacttatttataatagcgtcataagactcgaaaccatcgtgattacgttgtattttctcaaccttggca |
35783858 |
T |
|
| Q |
207 |
tgcctaggttgttggaagatagtagattctggaagactttgatcactaagatgttcagcatcttcagacatagaattttgtgtctcatttgacttatcca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783859 |
tgcctaggttgttggaagatagtagattctggaagattttgatcactaagatgttcagcatcttcagacatagaattttgtgtctcatttgacttatcca |
35783958 |
T |
|
| Q |
307 |
actgcggttttgtgactctccattgtgttggaggaactggaggaggtggtggtggtcgagtaggctctgcatgactatgtgatgt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783959 |
actgcggttttgtgactctccattgtgttggaggaactggaggaggtggtggtggtcgagtaggctctgcatgactatgtgatgt |
35784043 |
T |
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