View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6909_low_13 (Length: 371)
Name: NF6909_low_13
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 9615561 - 9615903
Alignment:
| Q |
22 |
atgcaaggaactgaagtgtaatataccaaaaataccctaccatgtatcactgttccagattgagctttctgatgagagacaaccaccataccacatgaga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9615561 |
atgcaaggaactgaagtgtaatataccaaaaataccctaccatgtatcactgttccagattgagctttctgatgagagacaatcaccataccacatgaga |
9615660 |
T |
|
| Q |
122 |
ccgtaagcaacggatgactaatagtgcaaagcatgctcctaaaccctgaagaaaggctagccatattcttaagtgcaagagtactacaagtaatcacata |
221 |
Q |
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||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9615661 |
ccgtaagcaactgataactaaaagtgcaaagcatgctcctaaaacctgaagaaaggctagccatattcttaagtgcaagagtactacaagtaatcacata |
9615760 |
T |
|
| Q |
222 |
aaacctccttcgtccccagactgccatcgctccttgctcatcatgttcctttgtaataactatactcctacaggttgatatagcatcacaaagatgagaa |
321 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9615761 |
aaacctccttcgtcccgagactgccatcgctccttgctcatcatgatcctttgtaataactatactcctataggttgatatagcatcacaaagatgagaa |
9615860 |
T |
|
| Q |
322 |
gaaaagaaaggaacagaccatactgagaacataacaccaccaa |
364 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9615861 |
gaaaagaaaggaacagaccatacagagaacataacaccaccaa |
9615903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 11516933 - 11517276
Alignment:
| Q |
22 |
atgcaaggaactgaagtgtaatataccaaaaataccctaccatgtatcactgttccagattgagctttctgatgagagacaaccaccataccacatgaga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11516933 |
atgcaaggaactgaagtgtaatataccaaaaataccctaccatgtatcactgttccagattgagctttctgatgagagacaatcaccataccacatgaga |
11517032 |
T |
|
| Q |
122 |
ccgtaagcaacggatgactaatagtgcaaagcatgctcctaaaccctgaagaaaggctagccatattcttaagtgcaagagtactacaagtaatcacata |
221 |
Q |
| |
|
||||||||||| ||| | ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11517033 |
ccgtaagcaactgataaataaaagtgcaaagcatgatcctaaaacctgaagaaaggctagccatattcttaagtgcaagagtactacaagtaatcacata |
11517132 |
T |
|
| Q |
222 |
aaacctccttcgtccccagactgccatcgctccttgctcatcatgttcctttgtaataactatactcctacaggttgatatagcatcacaaagatgagaa |
321 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11517133 |
aaacctccttcgtcccgagactgccatcgctccttgctcatcatgatcctttgtaataactatactcctataggttgatatagcatcacaaagatgagaa |
11517232 |
T |
|
| Q |
322 |
gaaaagaaaggaacagaccatactgagaacat-aacaccaccaa |
364 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
11517233 |
gaaaagaaaggaacagaccatacagagaacataaacaccaccaa |
11517276 |
T |
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