View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6909_low_14 (Length: 324)

Name: NF6909_low_14
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6909_low_14
NF6909_low_14
[»] chr4 (2 HSPs)
chr4 (1-314)||(7588760-7589073)
chr4 (67-197)||(46785672-46785802)
[»] chr8 (3 HSPs)
chr8 (1-314)||(26709841-26710154)
chr8 (60-176)||(14758751-14758867)
chr8 (76-176)||(26972296-26972396)
[»] chr7 (3 HSPs)
chr7 (13-304)||(16771107-16771398)
chr7 (66-155)||(23209065-23209154)
chr7 (73-248)||(27152600-27152775)
[»] chr3 (8 HSPs)
chr3 (36-260)||(3660781-3661005)
chr3 (67-302)||(17719555-17719790)
chr3 (67-302)||(19020784-19021019)
chr3 (72-305)||(15474635-15474868)
chr3 (70-152)||(38648382-38648464)
chr3 (14-163)||(24730236-24730385)
chr3 (79-215)||(53609509-53609645)
chr3 (91-215)||(26433916-26434040)
[»] chr2 (7 HSPs)
chr2 (36-260)||(39011287-39011511)
chr2 (70-203)||(26790133-26790266)
chr2 (72-206)||(16321260-16321394)
chr2 (76-227)||(35136419-35136570)
chr2 (72-161)||(42404419-42404508)
chr2 (79-143)||(9194807-9194871)
chr2 (118-218)||(40326983-40327083)
[»] chr6 (2 HSPs)
chr6 (36-218)||(13028579-13028761)
chr6 (31-188)||(13598425-13598582)
[»] chr5 (2 HSPs)
chr5 (66-302)||(23943779-23944015)
chr5 (113-302)||(7812542-7812731)
[»] chr1 (4 HSPs)
chr1 (73-215)||(50237768-50237910)
chr1 (14-160)||(23464197-23464343)
chr1 (71-161)||(5194254-5194344)
chr1 (79-206)||(50450709-50450836)
[»] scaffold0214 (1 HSPs)
scaffold0214 (73-287)||(7694-7908)
[»] scaffold0036 (1 HSPs)
scaffold0036 (113-176)||(67706-67769)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 7588760 - 7589073
Alignment:
Q  1 ctattgagagcattgatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7588760 ctattgagagcattgatggtgttatgattagaagtgttccaagagtctcttaccagggtctcataatctttgtggtcgatccaagcagcttcaaagcgaa 7588859  T
Q  101 aaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||    
T  7588860 aaggtctaggccctctagctaaagggagaccaccaaatcggagaagcaaaggattgtgatcagagtggagcctacaaagtacttccacaaaagcttcagg 7588959  T
Q  201 gaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacct 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  7588960 gaaggacatgcgccaatcaatattagctaggcctcggtcgagctttttggaaagaattctcatgccattattgttacggtgccaagtataatgaccacct 7589059  T
Q  301 gttgtagtgatgtc 314  Q
    ||||||||||||||    
T  7589060 gttgtagtgatgtc 7589073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 46785672 - 46785802
Alignment:
Q  67 tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt 166  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||  | || || | ||| ||||||||||| |||||||| |||||||| || |||||||    
T  46785672 tctttgtggtcaatccaagctgcttcaaagcggaaaggtctagggccccttgcaagaggaagaccaccaaagcggagaaggagaggattatggtcagagt 46785771  T
Q  167 gtagcctacaaagtacttccactaaagcttc 197  Q
    ||   |||||||| |||||||| ||||||||    
T  46785772 gtgttctacaaaggacttccacaaaagcttc 46785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 26709841 - 26710154
Alignment:
Q  1 ctattgagagcattgatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaa 100  Q
    |||||||||||||| ||||||||||||||||| | | |||||||||  ||||||||| |||||| |||||| ||||| ||||||||||||||||| ||||    
T  26709841 ctattgagagcattcatggtgttgtgattagaggagctccaagagttccttaccaggttctcataatctttatggtcaatccaagcagcttcaaaacgaa 26709940  T
Q  101 aaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggg 200  Q
    ||||||||||| |||| ||||||||||| || ||||  ||||||||  ||||||||||||||||||| ||||||||||| |||||||| || |||||||     
T  26709941 aaggtctaggccctcttgctaaagggaggcccccaatacggagaaggggaggattgtgatcagagtggagcctacaaagcacttccacgaaggcttcggt 26710040  T
Q  201 gaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacct 300  Q
    ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || |||    
T  26710041 gaatgacatgcgccagtcaatattagctagacctcggtcgagctttttggaaagaattctaatgccattattgttacgatgccatgtataacggcctcct 26710140  T
Q  301 gttgtagtgatgtc 314  Q
    ||||||||||||||    
T  26710141 gttgtagtgatgtc 26710154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 14758867 - 14758751
Alignment:
Q  60 ctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtga 159  Q
    ||||| ||| || |||||||||||||| |||||||| |||||||| | |||| |||| | ||||||||| || || || |||||||| |||||||| ||     
T  14758867 ctcataatccttatggtcgatccaagctgcttcaaatcgaaaagggcgaggccctctggataaagggagccctccgaaacggagaagaagaggattatgg 14758768  T
Q  160 tcagagtgtagcctaca 176  Q
    |||||||| ||||||||    
T  14758767 tcagagtggagcctaca 14758751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 26972396 - 26972296
Alignment:
Q  76 tcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctac 175  Q
    ||||||||||| |||||||| |||||||| | |||  |||||| ||||||| | || || ||  ||||||| |||||||| || |||||||| |||||||    
T  26972396 tcgatccaagctgcttcaaaacgaaaagggcgaggtcctctagataaagggggccctccgaaatggagaagaagaggattatggtcagagtggagcctac 26972297  T
Q  176 a 176  Q
    |    
T  26972296 a 26972296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 16771107 - 16771398
Alignment:
Q  13 ttgatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggct 112  Q
    ||||| ||||| ||||||||||  |||||||| | |||||||| | |||||| |||||||||||| ||||| |||||||||||||| || ||||||||      
T  16771107 ttgatagtgttatgattagaagatttccaagaatttcttaccaagttctcataatctttgtggtcaatccaggcagcttcaaagcggaacggtctagggc 16771206  T
Q  113 ctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcg 212  Q
    ||||||||| ||| || |||||||| |||||||| |||||||| ||||||||||  |  |||||||| || ||||| || ||||| ||||| || |||||    
T  16771207 ctctagctagaggaaggccaccaaagcggagaagaagaggattatgatcagagtacaatctacaaagcacctccacaaaggcttccgggaaagaaatgcg 16771306  T
Q  213 ccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgttg 304  Q
    |||||| | |||||  || ||||  || || ||||||||||||||||| || |||||||  || || || |||||  |||||||||| ||||    
T  16771307 ccaatcaacattagaaagacctctatcaagttttttggaaagaattctaataccattatgattgcgatggcaagtgaaacgaccaccagttg 16771398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 23209065 - 23209154
Alignment:
Q  66 atctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggatt 155  Q
    ||||||||| || |||||||| || |||||||| ||||| |||||| ||| |||||||||||| |||||||| ||||| || ||||||||    
T  23209065 atctttgtgatctatccaagctgcctcaaagcggaaaggcctaggccctcgagctaaagggagtccaccaaagcggaggaggagaggatt 23209154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 248
Target Start/End: Complemental strand, 27152775 - 27152600
Alignment:
Q  73 tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc 172  Q
    ||||| ||||||| ||||||||| || ||||| | |||| |||| ||||||||||| ||| ||||  |||| || | | ||||||||||||| || || |    
T  27152775 tggtctatccaagaagcttcaaaacggaaagggcgaggccctctggctaaagggaggccaacaaaatggaggaggatatgattgtgatcagaatgaagtc 27152676  T
Q  173 tacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagcttttt 248  Q
    |||| || || ||||| ||||||||  ||||||| | ||||||||| | ||| || ||||| |  |||||||||||    
T  27152675 tacagagaacctccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagcttttt 27152600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 3660781 - 3661005
Alignment:
Q  36 gttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccacca 135  Q
    |||||||||||||||||||||| ||||||  |||||||| || |||||||| |||||||||||||| ||||| ||  ||||| | |  ||||| ||||||    
T  3660781 gttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggaggccacca 3660880  T
Q  136 aatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctc 235  Q
    || ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||  |||||||||||| | ||| || |  || |    
T  3660881 aaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacatttgccataccgc 3660980  T
Q  236 ggtcgagctttttggaaagaattct 260  Q
    | || || |||||||||||||||||    
T  3660981 gatcaagttttttggaaagaattct 3661005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 302
Target Start/End: Original strand, 17719555 - 17719790
Alignment:
Q  67 tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt 166  Q
    ||||||||||| ||||| |||||||||||    ||||| |||||| ||||||| | |||||| || ||||| |||||||| |||||||| || |||||||    
T  17719555 tctttgtggtctatccaggcagcttcaaatatgaaaggcctaggccctctagcaagagggaggccgccaaaacggagaaggagaggattatggtcagagt 17719654  T
Q  167 gtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgcc 266  Q
    |||  |||||||| ||||| || |||||||| |||||||| ||| |||| || | ||||||||  |||| ||| ||||| || |||||||| |  || ||    
T  17719655 gtaatctacaaagaacttcaacgaaagcttctgggaaggatatgtgccagtccacattagctatccctctgtcaagcttcttagaaagaatgcggatacc 17719754  T
Q  267 attattgttacggtgccaagtataacgaccacctgt 302  Q
    |||||  ||||| ||||||||| |||||||||||||    
T  17719755 attatgattacgatgccaagtaaaacgaccacctgt 17719790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 302
Target Start/End: Original strand, 19020784 - 19021019
Alignment:
Q  67 tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt 166  Q
    ||||||||||| ||||| |||||||||||    ||||| |||||| ||||||| | |||||| || ||||| |||||||| |||||||| || |||||||    
T  19020784 tctttgtggtctatccaggcagcttcaaatatgaaaggcctaggccctctagcaagagggaggccgccaaaacggagaaggagaggattatggtcagagt 19020883  T
Q  167 gtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgcc 266  Q
    |||  |||||||| ||||| || |||||||| |||||||| ||| |||| || | ||||||||  |||| ||| ||||| || |||||||| |  || ||    
T  19020884 gtaatctacaaagaacttcaacgaaagcttctgggaaggatatgtgccagtccacattagctatccctctgtcaagcttcttagaaagaatgcggatacc 19020983  T
Q  267 attattgttacggtgccaagtataacgaccacctgt 302  Q
    |||||  ||||| ||||||||| |||||||||||||    
T  19020984 attatgattacgatgccaagtaaaacgaccacctgt 19021019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 305
Target Start/End: Original strand, 15474635 - 15474868
Alignment:
Q  72 gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagc 171  Q
    |||||| ||||| || |||||||| ||||| ||||||||| ||||||||| ||||||||| ||||| ||||| || ||||||||||| ||||| || |      
T  15474635 gtggtctatccaggctgcttcaaaacgaaagggtctaggccctctagctagagggagaccgccaaaacggaggaggagaggattgtggtcagaatgcaat 15474734  T
Q  172 ctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattat 271  Q
    ||||| || ||||| || |||||||  |||||||| |  ||||| |||| ||| || |  |||| ||| |||||||| || ||||| |  |||||||| |    
T  15474735 ctacagaggacttcaacaaaagcttaagggaaggaaagacgccagtcgacattcgccaaacctctgtcaagctttttagagagaatacggatgccattgt 15474834  T
Q  272 tgttacggtgccaagtataacgaccacctgttgt 305  Q
    ||||   |||||||||| | ||||||||||||||    
T  15474835 tgttcttgtgccaagtaaagcgaccacctgttgt 15474868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 38648382 - 38648464
Alignment:
Q  70 ttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagagg 152  Q
    |||||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||||||| ||||| || |||||    
T  38648382 ttgtggtcaatccaagctgcttcaaagcggaaaggcctgggccctctagctaaagggaggccaccaaaacggaggaggagagg 38648464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 24730385 - 24730236
Alignment:
Q  14 tgatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctc 113  Q
    ||||||| || || || |||| ||||||||| | |||||||| | |||  | ||| || ||||| ||||| ||||| |||||||| |||||||| ||  |    
T  24730385 tgatggtcttatggttggaagagttccaagaatttcttaccaagttcttgtaatccttatggtcaatccaggcagcctcaaagcggaaaggtcttggtcc 24730286  T
Q  114 tctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcag 163  Q
    |||||||||  ||||||||||||| |||||||| || ||||| |||||||    
T  24730285 tctagctaagaggagaccaccaaaacggagaagaaggggattatgatcag 24730236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 53609509 - 53609645
Alignment:
Q  79 atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaa 178  Q
    ||||| ||||||||||| || || || |||||  |||| || | |||||| |||||||| |||||||| || |||||||||||||||||||  || || |    
T  53609509 atccaggcagcttcaaaccggaagggcctaggacctctcgcaagagggaggccaccaaaacggagaagaagtggattgtgatcagagtgtaatctgcaga 53609608  T
Q  179 gtacttccactaaagcttcggggaaggacatgcgcca 215  Q
    | ||||| || |||||||| || ||||| | ||||||    
T  53609609 gaacttcaacaaaagcttccggaaaggataggcgcca 53609645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 26433916 - 26434040
Alignment:
Q  91 tcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccacta 190  Q
    ||||| ||||||||||   || |||| ||||| ||||| || ||||| || || || ||||||||||| ||||| || | ||||||||| || || || |    
T  26433916 tcaaaacgaaaaggtcgttgccctcttgctaatgggaggcccccaaaacgaaggagaagaggattgtggtcagaatgaaacctacaaagaacctcaacga 26434015  T
Q  191 aagcttcggggaaggacatgcgcca 215  Q
    ||||||| ||||||  |||||||||    
T  26434016 aagcttccgggaagctcatgcgcca 26434040  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 39011511 - 39011287
Alignment:
Q  36 gttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccacca 135  Q
    |||||||||||||||||||||| ||||||  |||||||| || |||||||| |||||||||||||| ||||| ||  ||||| | |  ||||| ||||||    
T  39011511 gttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggaggccacca 39011412  T
Q  136 aatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctc 235  Q
    || ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||  |||||||||||| | ||| || |  || |    
T  39011411 aaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacatttgccataccgc 39011312  T
Q  236 ggtcgagctttttggaaagaattct 260  Q
    | || || |||||||||||||||||    
T  39011311 gatcaagttttttggaaagaattct 39011287  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 26790266 - 26790133
Alignment:
Q  70 ttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgta 169  Q
    ||||| || |||||||||||||||||||| ||||| || ||  ||| ||| ||||| |||||||| || |||||||| ||||||||||| |||||||| |    
T  26790266 ttgtgatcaatccaagcagcttcaaagcggaaaggccttggtcctcgagcaaaaggaagaccaccgaaacggagaaggagaggattgtggtcagagtgaa 26790167  T
Q  170 gcctacaaagtacttccactaaagcttcggggaa 203  Q
    |||| ||||| | ||| || ||||| ||||||||    
T  26790166 gcctgcaaaggatttcaacaaaagcctcggggaa 26790133  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 16321394 - 16321260
Alignment:
Q  72 gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagc 171  Q
    |||||| |||||||| |||||||| ||||||||||||||  ||||||  | ||||||||| ||||| ||||| || ||||| || |||||||| || |      
T  16321394 gtggtctatccaagctgcttcaaatcgaaaaggtctagggcctctagtaagagggagaccgccaaaacggaggaggagagggttatgatcagaatgcaat 16321295  T
Q  172 ctacaaagtacttccactaaagcttcggggaagga 206  Q
    ||||| || ||||| || |||||||| ||||||||    
T  16321294 ctacagaggacttcaacaaaagcttcagggaagga 16321260  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 35136419 - 35136570
Alignment:
Q  76 tcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctac 175  Q
    |||||||| ||||| ||||| || |||||||| ||  |||  |||| ||| ||||||||||| || ||||| || |||||||| |||||||| |  ||||    
T  35136419 tcgatccatgcagcctcaaaacggaaaggtctcggacctcgggctagaggaagaccaccaaaacgaagaagaagcggattgtggtcagagtgaaatctac 35136518  T
Q  176 aaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagc 227  Q
    | |  ||||| || |||||||||||||| | |||||||||||| | ||||||    
T  35136519 acaacacttcaacaaaagcttcggggaaagccatgcgccaatcaacattagc 35136570  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 42404419 - 42404508
Alignment:
Q  72 gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatc 161  Q
    |||||| ||||| || |||||||| || || ||||||||| |||||| || ||||||||| ||||| ||||| || ||||||||||||||    
T  42404419 gtggtctatccaggctgcttcaaaacggaagggtctaggccctctaggtagagggagaccgccaaaacggaggaggagaggattgtgatc 42404508  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 9194807 - 9194871
Alignment:
Q  79 atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggag 143  Q
    ||||||||||| |||||| | |||||||||||| |||||| ||  |||||||||||||| |||||    
T  9194807 atccaagcagcctcaaagtggaaaggtctaggccctctagttagggggagaccaccaaaacggag 9194871  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 40327083 - 40326983
Alignment:
Q  118 gctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaat 217  Q
    |||| ||| ||||||||||| || ||||| || |||||||| |||||||| |  ||||| |  ||||| || |||||||||||||| | |||||||||||    
T  40327083 gctagaggaagaccaccaaaacgaagaagaagcggattgtggtcagagtgaaatctacacaacacttcaacaaaagcttcggggaaagccatgcgccaat 40326984  T
Q  218 c 218  Q
    |    
T  40326983 c 40326983  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 13028579 - 13028761
Alignment:
Q  36 gttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccacca 135  Q
    |||||||||||||||||||||| ||||||  |||||||| || |||||||| |||||||||||||| ||||| ||  ||||| | |  ||||| ||||||    
T  13028579 gttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggaggccacca 13028678  T
Q  136 aatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatc 218  Q
    || ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||  ||||||||||||    
T  13028679 aaacggaggagaaggggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatc 13028761  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 13598582 - 13598425
Alignment:
Q  31 gaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagac 130  Q
    |||| ||||||| | | |||||||| | ||| || ||| |||||||  |||||||||||||||||||| ||||| | |||  |||| ||||| || ||||    
T  13598582 gaagagttccaaaaatttcttaccaagttcttataatccttgtggttaatccaagcagcttcaaagcggaaaggacgaggacctcttgctaagggaagac 13598483  T
Q  131 caccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccac 188  Q
     |||||| ||||| || || ||||| ||||| || |  || ||||||||||| |||||    
T  13598482 taccaaagcggagtaggaggggattatgatctgaataaagtctacaaagtacctccac 13598425  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 302
Target Start/End: Complemental strand, 23944015 - 23943779
Alignment:
Q  66 atctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagag 165  Q
    |||||| ||||| ||||| || |||||||| || ||||| |||||| ||||||| | |||||| |||||||| |||||||| |||||||| ||||| |||    
T  23944015 atctttatggtctatccaggctgcttcaaatcggaaaggcctaggccctctagcaagagggaggccaccaaaacggagaaggagaggattatgatccgag 23943916  T
Q  166 tgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgc 265  Q
    ||||  |||||||| ||||| || |||||||| |||||||| | ||||||||| | ||||||||| |||| ||| ||||| || |||||||||   || |    
T  23943915 tgtaatctacaaagaacttcaacaaaagcttctgggaaggataagcgccaatctacattagctagccctctgtcaagcttcttagaaagaatttggatac 23943816  T
Q  266 cattattgttacggtgccaagtataacgaccacctgt 302  Q
    |||| |  ||||| ||||||||| | |||||||||||    
T  23943815 cattctgattacgatgccaagtaaagcgaccacctgt 23943779  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 302
Target Start/End: Complemental strand, 7812731 - 7812542
Alignment:
Q  113 ctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcg 212  Q
    ||||||||| ||| |||||||| |||||||| || ||||||||||||||||| || || |||||||| || | ||| || ||||| ||||| ||||| ||    
T  7812731 ctctagctagaggaagaccaccgaatcggagtagaagaggattgtgatcagaatgaagtctacaaaggacctgcacaaaggcttctgggaaagacatacg 7812632  T
Q  213 ccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgt 302  Q
    ||| || | |||||| ||||||| ||| |||||||| || ||||| |  ||||| ||||| || |  ||||||||| ||||||| |||||    
T  7812631 ccagtcaacattagcaaggcctctgtcaagctttttcgagagaatacggatgccgttattatttctatgccaagtaaaacgaccgcctgt 7812542  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 50237768 - 50237910
Alignment:
Q  73 tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc 172  Q
    ||||||||||| || |||||||| |||||||||||| || |||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| |    
T  50237768 tggtcgatccatgctgcttcaaaacgaaaaggtctaagccctctagctaaagggaggccaccaaagcggagaaggaggggattgtgatcagaatgtagac 50237867  T
Q  173 tacaaagtacttccactaaagcttcggggaaggacatgcgcca 215  Q
     ||| || || || || ||||||||  ||||||| || |||||    
T  50237868 gacataggacctcaacgaaagcttcaaggaaggatatacgcca 50237910  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 23464343 - 23464197
Alignment:
Q  14 tgatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctc 113  Q
    |||| ||||| ||||| |||| ||||||||| | |||||||| | |||||| |||||||||| | ||||| |||||||||||||| || ||||||||  |    
T  23464343 tgatagtgttatgattggaagagttccaagaatttcttaccaagttctcataatctttgtggccaatccaggcagcttcaaagcggaacggtctagggcc 23464244  T
Q  114 tctagctaaagggagaccaccaaatcggagaagcagaggattgtgat 160  Q
    |||||||| ||| || ||||||||  ||||||| |||||||| ||||    
T  23464243 tctagctagaggaaggccaccaaaatggagaagaagaggattatgat 23464197  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 5194254 - 5194344
Alignment:
Q  71 tgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatc 161  Q
    ||||||| |||||||| |||||||| || ||| |||||||| ||||||||||||||||  ||||||| ||||| || |||||||| |||||    
T  5194254 tgtggtcaatccaagctgcttcaaaacggaaatgtctaggccctctagctaaagggaggtcaccaaagcggaggaggagaggattatgatc 5194344  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 50450836 - 50450709
Alignment:
Q  79 atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaa 178  Q
    ||||||||||||||||| |||||||| |||||| |||| || |  || || ||||| || ||||| || || ||||| ||||| || |||||||| || |    
T  50450836 atccaagcagcttcaaaacgaaaaggcctaggccctcttgcgaggggaaggccaccgaagcggagtaggaggggattatgatctgaatgtagcctgcata 50450737  T
Q  179 gtacttccactaaagcttcggggaagga 206  Q
    |||| ||||| || ||||| ||||||||    
T  50450736 gtacctccacaaaggcttccgggaagga 50450709  T

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Target: scaffold0214 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 287
Target Start/End: Complemental strand, 7908 - 7694
Alignment:
Q  73 tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc 172  Q
    ||||| ||||||||||||||||| || |||||||  ||  ||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||    
T  7908 tggtcaatccaagcagcttcaaatcggaaaggtcgtggtcctcgagcgaaaggtagaccaccaaagcggagaaggagaggattatgatcagagtgaagcc 7809  T
Q  173 tacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattatt 272  Q
    | ||||| | ||| || ||||| ||||||||||  | ||||||| | | ||||||||  ||||  || ||||| |||||||| || |  | |||||| ||    
T  7808 tgcaaaggatttcaacaaaagcctcggggaaggcaaggcgccaaccaacattagctaaacctctatcaagcttcttggaaaggatgcgaaggccattgtt 7709  T
Q  273 gttacggtgccaagt 287  Q
    ||| || ||||||||    
T  7708 gttccgatgccaagt 7694  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 67769 - 67706
Alignment:
Q  113 ctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctaca 176  Q
    |||| |||||||| ||||||||||| || ||||| || ||||| ||||||||||| ||||||||    
T  67769 ctctggctaaaggaagaccaccaaaacgaagaagaagcggattatgatcagagtggagcctaca 67706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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