View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6909_low_15 (Length: 320)
Name: NF6909_low_15
Description: NF6909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6909_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 126 - 306
Target Start/End: Original strand, 38552160 - 38552340
Alignment:
| Q |
126 |
ccttaagccgtgttccaacaattttatgccctcacttgagtaacaagcgggcgttaaaagctcggcgtttattcatgcttaatctaactttataaaggct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
38552160 |
ccttaagccgtgttccaacaattttatgccctcacttgagtgacaagctggcgttaatagctcggcgttgatttatgcttaatctaactttataaaggcc |
38552259 |
T |
|
| Q |
226 |
catatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38552260 |
catatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38552340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 38596653 - 38596473
Alignment:
| Q |
126 |
ccttaagccgtgttccaacaattttatgccctcacttgagtaacaagcgggcgttaaaagctcggcgtttattcatgcttaatctaactttataaaggct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||| | |
|
|
| T |
38596653 |
ccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagctcggcattgattcatgcttaatctaactttataaagacc |
38596554 |
T |
|
| Q |
226 |
catatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38596553 |
catatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38596473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 38061203 - 38061023
Alignment:
| Q |
126 |
ccttaagccgtgttccaacaattttatgccctcacttgagtaacaagcgggcgttaaaagctcggcgtttattcatgcttaatctaactttataaaggct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
38061203 |
ccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctgtcgttaatagctcggcgtcgattcatgcttaatcttactttataaaggcc |
38061104 |
T |
|
| Q |
226 |
catatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38061103 |
catatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38061023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University